Information for 3-ACAGGTTCWGNTSTCT (Motif 5)

G T C A A G T C C G T A A C T G C T A G A G C T C A G T T A G C C G A T C A T G C T A G A C G T A T G C A C G T A G T C A C G T
Reverse Opposite:
G T C A A C T G C G T A A T C G C G T A A G T C G T A C G C T A A T C G G T C A T C G A A G T C G T A C A C G T C T A G C A G T
p-value:1e-12
log p-value:-2.870e+01
Information Content per bp:1.712
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.66%
Number of Background Sequences with motif34.3
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets57.8 +/- 28.3bp
Average Position of motif in Background55.1 +/- 25.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0060.1_Smad3_1/Jaspar

Match Rank:1
Score:0.54
Offset:6
Orientation:reverse strand
Alignment:ACAGGTTCWGNTSTCT-------
------NNTNNTGTCTGGNNTNG
 G T C A A G T C C G T A A C T G C T A G A G C T C A G T T A G C C G A T C A T G C T A G A C G T A T G C A C G T A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:2
Score:0.54
Offset:3
Orientation:forward strand
Alignment:ACAGGTTCWGNTSTCT
---GKVTCADRTTWC-
 G T C A A G T C C G T A A C T G C T A G A G C T C A G T T A G C C G A T C A T G C T A G A C G T A T G C A C G T A G T C A C G T
A C G T A C G T A C G T C T A G C A T G T G C A A C G T A G T C C G T A C A T G T C A G A C G T A C G T G C T A A G T C A C G T

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:3
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:ACAGGTTCWGNTSTCT
---GKMTCADRTTWC-
 G T C A A G T C C G T A A C T G C T A G A G C T C A G T T A G C C G A T C A T G C T A G A C G T A T G C A C G T A G T C A C G T
A C G T A C G T A C G T C T A G C A G T T G C A A C G T G A T C T C G A C T A G T C A G A C G T C A G T G C A T G A T C A C G T

PB0126.1_Gata5_2/Jaspar

Match Rank:4
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:ACAGGTTCWGNTSTCT-----
----NNNCTGATATCTCNNNN
 G T C A A G T C C G T A A C T G C T A G A G C T C A G T T A G C C G A T C A T G C T A G A C G T A T G C A C G T A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T G C A T G A C C T G A G A T C G C A T C T A G G T C A C A G T G T C A A C G T G T A C C A G T G A T C C A G T T A C G A C G T A G T C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.50
Offset:10
Orientation:forward strand
Alignment:ACAGGTTCWGNTSTCT--
----------CTGTCTGG
 G T C A A G T C C G T A A C T G C T A G A G C T C A G T T A G C C G A T C A T G C T A G A C G T A T G C A C G T A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G

GATA2/MA0036.2/Jaspar

Match Rank:6
Score:0.49
Offset:2
Orientation:forward strand
Alignment:ACAGGTTCWGNTSTCT
--AGATTCTTATCTGT
 G T C A A G T C C G T A A C T G C T A G A G C T C A G T T A G C C G A T C A T G C T A G A C G T A T G C A C G T A G T C A C G T
A C G T A C G T C G T A C T A G C T G A G C A T A G C T A T G C A G C T C G A T C G T A A C G T A G T C C G A T A T C G G C A T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.49
Offset:8
Orientation:forward strand
Alignment:ACAGGTTCWGNTSTCT--
--------VBSYGTCTGG
 G T C A A G T C C G T A A C T G C T A G A G C T C A G T T A G C C G A T C A T G C T A G A C G T A T G C A C G T A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G

PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer

Match Rank:8
Score:0.48
Offset:8
Orientation:forward strand
Alignment:ACAGGTTCWGNTSTCT----
--------AGGTCTCTAACC
 G T C A A G T C C G T A A C T G C T A G A G C T C A G T T A G C C G A T C A T G C T A G A C G T A T G C A C G T A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A T C A G A C T G C A G T A G T C G A C T A G T C A C G T C G T A G C T A A T G C G A T C

SNAI2/MA0745.1/Jaspar

Match Rank:9
Score:0.48
Offset:-1
Orientation:forward strand
Alignment:-ACAGGTTCWGNTSTCT
AACAGGTGT--------
 A C G T G T C A A G T C C G T A A C T G C T A G A G C T C A G T T A G C C G A T C A T G C T A G A C G T A T G C A C G T A G T C A C G T
C T G A C T G A G T A C G C T A C T A G C T A G G A C T C A T G A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0021.1_Gata3_1/Jaspar

Match Rank:10
Score:0.48
Offset:-1
Orientation:reverse strand
Alignment:-ACAGGTTCWGNTSTCT-----
NNTNANTTCTTATCTCTANANN
 A C G T G T C A A G T C C G T A A C T G C T A G A G C T C A G T T A G C C G A T C A T G C T A G A C G T A T G C A C G T A G T C A C G T A C G T A C G T A C G T A C G T A C G T
G T A C A G C T C A G T G C A T T G C A C G A T G A C T A C G T A T G C C G A T C G A T C G T A A C G T A G T C C G A T G T A C G A C T G C T A G C T A C G T A G T C A T C G A