Information for 19-CAACAGGAGADATCAC (Motif 41)

A G T C G C T A C T G A G A T C T C G A C T A G A T C G C T G A A C T G C G T A C T A G C G T A G C A T A G T C G T C A A G T C
Reverse Opposite:
C T A G A C G T A C T G C G T A A C G T G A T C G C A T G T A C A G C T T A G C A G T C A G C T C T A G A G C T C G A T A C T G
p-value:1e-6
log p-value:-1.443e+01
Information Content per bp:1.731
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.42%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets48.6 +/- 26.1bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)2.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0037.1_Hdx/Jaspar

Match Rank:1
Score:0.64
Offset:3
Orientation:forward strand
Alignment:CAACAGGAGADATCAC----
---AAGGCGAAATCATCGCA
 A G T C G C T A C T G A G A T C T C G A C T A G A T C G C T G A A C T G C G T A C T A G C G T A G C A T A G T C G T C A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G T A C T G A A C T G C A T G G T A C C T A G T G C A C G T A C G T A A C G T A T G C G C T A G A C T G A T C A T C G G T A C T G C A

PB0126.1_Gata5_2/Jaspar

Match Rank:2
Score:0.54
Offset:2
Orientation:forward strand
Alignment:CAACAGGAGADATCAC---
--GACAGAGATATCAGTGT
 A G T C G C T A C T G A G A T C T C G A C T A G A T C G C T G A A C T G C G T A C T A G C G T A G C A T A G T C G T C A A G T C A C G T A C G T A C G T
A C G T A C G T T C A G T G C A A G T C G T C A C T A G G T C A C A T G T C G A C A G T G T C A C A G T G A T C C G T A C T A G G A C T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--CAACAGGAGADATCAC
CACAGCAGGGGG------
 A C G T A C G T A G T C G C T A C T G A G A T C T C G A C T A G A T C G C T G A A C T G C G T A C T A G C G T A G C A T A G T C G T C A A G T C
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T A C G T A C G T A C G T A C G T

PH0162.1_Six2/Jaspar

Match Rank:4
Score:0.52
Offset:3
Orientation:forward strand
Alignment:CAACAGGAGADATCAC----
---AATGGGGTATCACGTTT
 A G T C G C T A C T G A G A T C T C G A C T A G A T C G C T G A A C T G C G T A C T A G C G T A G C A T A G T C G T C A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T G A G C T A C A G T T C A G C T A G A C T G C T A G A C G T C T G A A C G T G A T C C T G A G A T C C A G T G C A T G A C T C A G T

PB0206.1_Zic2_2/Jaspar

Match Rank:5
Score:0.52
Offset:-5
Orientation:forward strand
Alignment:-----CAACAGGAGADATCAC
CCACACAGCAGGAGA------
 A C G T A C G T A C G T A C G T A C G T A G T C G C T A C T G A G A T C T C G A C T A G A T C G C T G A A C T G C G T A C T A G C G T A G C A T A G T C G T C A A G T C
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T A C G T A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:6
Score:0.52
Offset:-5
Orientation:forward strand
Alignment:-----CAACAGGAGADATCAC
CCACACAGCAGGAGA------
 A C G T A C G T A C G T A C G T A C G T A G T C G C T A C T G A G A T C T C G A C T A G A T C G C T G A A C T G C G T A C T A G C G T A G C A T A G T C G T C A A G T C
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T A C G T A C G T A C G T A C G T

PH0161.1_Six1/Jaspar

Match Rank:7
Score:0.52
Offset:3
Orientation:forward strand
Alignment:CAACAGGAGADATCAC----
---GATGGGGTATCATTTTT
 A G T C G C T A C T G A G A T C T C G A C T A G A T C G C T G A A C T G C G T A C T A G C G T A G C A T A G T C G T C A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T A G G C T A C A G T T C A G C T A G A T C G T C A G A C G T C T G A A C G T G A T C C T G A G A C T C A G T G C A T A C G T C A G T

Gfi1/MA0038.1/Jaspar

Match Rank:8
Score:0.51
Offset:8
Orientation:forward strand
Alignment:CAACAGGAGADATCAC--
--------CAAATCACTG
 A G T C G C T A C T G A G A T C T C G A C T A G A T C G C T G A A C T G C G T A C T A G C G T A G C A T A G T C G T C A A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C T G C A C G T A C G T A C A G T G T A C G C T A T A G C G C A T T A C G

SCRT2/MA0744.1/Jaspar

Match Rank:9
Score:0.50
Offset:-3
Orientation:forward strand
Alignment:---CAACAGGAGADATCAC
ATGCAACAGGTGG------
 A C G T A C G T A C G T A G T C G C T A C T G A G A T C T C G A C T A G A T C G C T G A A C T G C G T A C T A G C G T A G C A T A G T C G T C A A G T C
T C G A G C A T A C T G G T A C T G C A C G T A G T A C G T C A T C A G A T C G G C A T C A T G A T C G A C G T A C G T A C G T A C G T A C G T A C G T

Six3/MA0631.1/Jaspar

Match Rank:10
Score:0.50
Offset:3
Orientation:forward strand
Alignment:CAACAGGAGADATCAC----
---GATAGGGTATCACTAAT
 A G T C G C T A C T G A G A T C T C G A C T A G A T C G C T G A A C T G C G T A C T A G C G T A G C A T A G T C G T C A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T A G C G T A C G A T C T G A T A C G A C T G T C A G A C G T C T G A A C G T G A T C T C G A G A T C G C A T C G A T G C T A A C G T