Information for 2-NCTTTGGGAGGTT (Motif 3)

A C T G A G T C A C G T A C G T A C G T A C T G A C T G T A C G C G T A A C T G A T C G A C G T A G C T
Reverse Opposite:
C T G A C G T A A T G C A G T C A C G T A T G C A G T C A G T C C G T A C G T A C G T A A C T G A G T C
p-value:1e-13
log p-value:-3.035e+01
Information Content per bp:1.854
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.97%
Number of Background Sequences with motif3.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets40.7 +/- 23.3bp
Average Position of motif in Background58.1 +/- 41.8bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIA/MA0670.1/Jaspar

Match Rank:1
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:NCTTTGGGAGGTT
-NNTTGGCANN--
 A C T G A G T C A C G T A C G T A C G T A C T G A C T G T A C G C G T A A C T G A T C G A C G T A G C T
A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:2
Score:0.61
Offset:3
Orientation:forward strand
Alignment:NCTTTGGGAGGTT
---TTGGCA----
 A C T G A G T C A C G T A C G T A C G T A C T G A C T G T A C G C G T A A C T G A T C G A C G T A G C T
A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T

PH0102.1_Meis1/Jaspar

Match Rank:3
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:NCTTTGGGAGGTT---
NTATTGACAGCTNNTT
 A C T G A G T C A C G T A C G T A C G T A C T G A C T G T A C G C G T A A C T G A T C G A C G T A G C T A C G T A C G T A C G T
C T A G A C G T C G T A C G A T A C G T A C T G C G T A A G T C C T G A A C T G A T G C G A C T T A G C A T C G G C A T G C A T

PH0140.1_Pknox1/Jaspar

Match Rank:4
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:NCTTTGGGAGGTT---
GGATTGACAGGTCNTT
 A C T G A G T C A C G T A C G T A C G T A C T G A C T G T A C G C G T A A C T G A T C G A C G T A G C T A C G T A C G T A C G T
A C T G A C T G C G T A C G A T A C G T C T A G C G T A A G T C C T G A A C T G A T C G G A C T T A G C A C G T G A C T G C A T

PH0104.1_Meis2/Jaspar

Match Rank:5
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:NCTTTGGGAGGTT---
NTATTGACAGGTNNTN
 A C T G A G T C A C G T A C G T A C G T A C T G A C T G T A C G C G T A A C T G A T C G A C G T A G C T A C G T A C G T A C G T
C T A G C A G T G C T A C G A T G A C T C T A G C G T A A G T C C T G A A C T G A T C G G A C T T A G C A G C T G C A T C G A T

NFIX/MA0671.1/Jaspar

Match Rank:6
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:NCTTTGGGAGGTT
--NTTGGCANN--
 A C T G A G T C A C G T A C G T A C G T A C T G A C T G T A C G C G T A A C T G A T C G A C G T A G C T
A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:NCTTTGGGAGGTT
--CTTGGCAA---
 A C T G A G T C A C G T A C G T A C G T A C T G A C T G T A C G C G T A A C T G A T C G A C G T A G C T
A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T

PH0105.1_Meis3/Jaspar

Match Rank:8
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:NCTTTGGGAGGTT---
GTATTGACAGGTNNTT
 A C T G A G T C A C G T A C G T A C G T A C T G A C T G T A C G C G T A A C T G A T C G A C G T A G C T A C G T A C G T A C G T
C A T G A C G T C G T A C G A T G A C T A C T G C G T A A G T C C T G A C T A G T A C G G A C T T G C A G C T A G A C T G C A T

PH0170.1_Tgif2/Jaspar

Match Rank:9
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:NCTTTGGGAGGTT---
GTATTGACAGCTNNTT
 A C T G A G T C A C G T A C G T A C G T A C T G A C T G T A C G C G T A A C T G A T C G A C G T A G C T A C G T A C G T A C G T
A C T G A C G T C G T A C G A T C G A T A C T G C G T A A G T C C T G A C A T G T A G C G A C T T C G A T A C G G C A T C G A T

PB0092.1_Zbtb7b_1/Jaspar

Match Rank:10
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-NCTTTGGGAGGTT-
ATTTTNGGGGGGCNN
 A C G T A C T G A G T C A C G T A C G T A C G T A C T G A C T G T A C G C G T A A C T G A T C G A C G T A G C T A C G T
T C G A C A G T G C A T C G A T C G A T C G A T C A T G C T A G A C T G A C T G A C T G A T C G A G T C G A C T G A C T