Information for 9-GCCGTGCTGCGGA (Motif 18)

A C T G A G T C G A T C A C T G G C A T A C T G A G T C A C G T A C T G A T G C C T A G A C T G C T G A
Reverse Opposite:
A G C T A G T C A G T C A T C G A G T C G T C A A C T G A G T C C G T A A G T C C T A G A C T G A G T C
p-value:1e-8
log p-value:-2.050e+01
Information Content per bp:1.839
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.25%
Number of Background Sequences with motif30.1
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets63.1 +/- 19.4bp
Average Position of motif in Background56.7 +/- 25.6bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL009.1_DCE_S_II/Jaspar

Match Rank:1
Score:0.54
Offset:5
Orientation:forward strand
Alignment:GCCGTGCTGCGGA
-----GCTGTG--
 A C T G A G T C G A T C A C T G G C A T A C T G A G T C A C G T A C T G A T G C C T A G A C T G C T G A
A C G T A C G T A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T

PB0199.1_Zfp161_2/Jaspar

Match Rank:2
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GCCGTGCTGCGGA-
GCCGCGCAGTGCGT
 A C T G A G T C G A T C A C T G G C A T A C T G A G T C A C G T A C T G A T G C C T A G A C T G C T G A A C G T
C A T G G A T C A G T C T A C G G A T C C T A G T G A C G T C A C T A G A C G T C T A G G T A C T C A G A G C T

GLIS2/MA0736.1/Jaspar

Match Rank:3
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:GCCGTGCTGCGGA--
-CTTCGCGGGGGGTC
 A C T G A G T C G A T C A C T G G C A T A C T G A G T C A C G T A C T G A T G C C T A G A C T G C T G A A C G T A C G T
A C G T T A G C C A G T G A C T G A T C T C A G G A T C C T A G C A T G A C T G C T A G C A T G C T A G A G C T T G A C

PB0206.1_Zic2_2/Jaspar

Match Rank:4
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-GCCGTGCTGCGGA-
TCNCCTGCTGNGNNN
 A C G T A C T G A G T C G A T C A C T G G C A T A C T G A G T C A C G T A C T G A T G C C T A G A C T G C T G A A C G T
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

POL010.1_DCE_S_III/Jaspar

Match Rank:5
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:GCCGTGCTGCGGA
----NGCTN----
 A C T G A G T C G A T C A C T G G C A T A C T G A G T C A C G T A C T G A T G C C T A G A C T G C T G A
A C G T A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-GCCGTGCTGCGGA
CCCCCTGCTGTG--
 A C G T A C T G A G T C G A T C A C T G G C A T A C T G A G T C A C G T A C T G A T G C C T A G A C T G C T G A
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T

ZIC3/MA0697.1/Jaspar

Match Rank:7
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:GCCGTGCTGCGGA--
NCGCAGCGGGGGGTC
 A C T G A G T C G A T C A C T G G C A T A C T G A G T C A C G T A C T G A T G C C T A G A C T G C T G A A C G T A C G T
C A T G G T A C C T A G G A T C T G C A T C A G A G T C C T A G A C T G A C T G C A T G C A T G C A T G A G C T T G A C

NHLH1/MA0048.2/Jaspar

Match Rank:8
Score:0.52
Offset:1
Orientation:forward strand
Alignment:GCCGTGCTGCGGA
-CGCAGCTGCG--
 A C T G A G T C G A T C A C T G G C A T A C T G A G T C A C G T A C T G A T G C C T A G A C T G C T G A
A C G T T G A C T C A G G T A C T G C A A T C G T A G C A C G T T A C G G A T C A C T G A C G T A C G T

PB0024.1_Gcm1_1/Jaspar

Match Rank:9
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:GCCGTGCTGCGGA-----
--NNNNATGCGGGTNNNN
 A C T G A G T C G A T C A C T G G C A T A C T G A G T C A C G T A C T G A T G C C T A G A C T G C T G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G T C A C T G A G C A T A C T G T C G A G A C T T C A G A T G C C A T G A C T G A C T G A G C T C G T A A G T C A C T G C G T A

PB0205.1_Zic1_2/Jaspar

Match Rank:10
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-GCCGTGCTGCGGA-
TNTCCTGCTGTGNNG
 A C G T A C T G A G T C G A T C A C T G G C A T A C T G A G T C A C G T A C T G A T G C C T A G A C T G C T G A A C G T
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G