Information for 9-GGAGCTTSAAGGCTGG (Motif 16)

A C T G A C T G C G T A A C T G A G T C A G C T A C G T A T C G C G T A C G T A A C T G A C T G A T G C A C G T A C T G A C T G
Reverse Opposite:
A G T C A G T C C G T A A T C G A G T C A G T C C G A T A C G T A T C G T C G A C T G A C T A G A G T C A C G T A G T C G T A C
p-value:1e-9
log p-value:-2.239e+01
Information Content per bp:1.848
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.69%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets43.8 +/- 8.0bp
Average Position of motif in Background77.8 +/- 11.4bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL013.1_MED-1/Jaspar

Match Rank:1
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-GGAGCTTSAAGGCTGG
CGGAGC-----------
 A C G T A C T G A C T G C G T A A C T G A G T C A G C T A C G T A T C G C G T A C G T A A C T G A C T G A T G C A C G T A C T G A C T G
A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:2
Score:0.51
Offset:8
Orientation:forward strand
Alignment:GGAGCTTSAAGGCTGG
--------TWGTCTGV
 A C T G A C T G C G T A A C T G A G T C A G C T A C G T A T C G C G T A C G T A A C T G A C T G A T G C A C G T A C T G A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G

POL010.1_DCE_S_III/Jaspar

Match Rank:3
Score:0.49
Offset:10
Orientation:reverse strand
Alignment:GGAGCTTSAAGGCTGG
----------NGCTN-
 A C T G A C T G C G T A A C T G A G T C A G C T A C G T A T C G C G T A C G T A A C T G A C T G A T G C A C G T A C T G A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:4
Score:0.49
Offset:6
Orientation:reverse strand
Alignment:GGAGCTTSAAGGCTGG------
------NGTAGGTTGGCATNNN
 A C T G A C T G C G T A A C T G A G T C A G C T A C G T A T C G C G T A C G T A A C T G A C T G A T G C A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

PB0191.1_Tcfap2c_2/Jaspar

Match Rank:5
Score:0.49
Offset:1
Orientation:forward strand
Alignment:GGAGCTTSAAGGCTGG
-CCGCCCAAGGGCAG-
 A C T G A C T G C G T A A C T G A G T C A G C T A C G T A T C G C G T A C G T A A C T G A C T G A T G C A C G T A C T G A C T G
A C G T A T G C G A T C T C A G G T A C G A T C G A T C C G T A G C T A C T A G C T A G C A T G A G T C C G T A C T A G A C G T

PB0167.1_Sox13_2/Jaspar

Match Rank:6
Score:0.47
Offset:5
Orientation:forward strand
Alignment:GGAGCTTSAAGGCTGG------
-----GTATTGGGTGGGTAATT
 A C T G A C T G C G T A A C T G A G T C A G C T A C G T A T C G C G T A C G T A A C T G A C T G A T G C A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T A G C G A T C T G A G A C T A G C T C A T G C A T G C T A G G C A T A C T G C A T G C A T G C G A T G C T A G C A T G C A T C A G T

PB0060.1_Smad3_1/Jaspar

Match Rank:7
Score:0.47
Offset:4
Orientation:reverse strand
Alignment:GGAGCTTSAAGGCTGG-----
----NNTNNTGTCTGGNNTNG
 A C T G A C T G C G T A A C T G A G T C A G C T A C G T A T C G C G T A C G T A A C T G A C T G A T G C A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

TFAP2C/MA0524.2/Jaspar

Match Rank:8
Score:0.46
Offset:2
Orientation:forward strand
Alignment:GGAGCTTSAAGGCTGG
--TGCCCCAGGGCA--
 A C T G A C T G C G T A A C T G A G T C A G C T A C G T A T C G C G T A C G T A A C T G A C T G A T G C A C G T A C T G A C T G
A C G T A C G T G A C T T A C G T A G C G A T C A G T C A G T C T C G A T C A G C T A G T A C G A T G C C T G A A C G T A C G T

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:9
Score:0.46
Offset:2
Orientation:forward strand
Alignment:GGAGCTTSAAGGCTGG
--ACWTCAAAGG----
 A C T G A C T G C G T A A C T G A G T C A G C T A C G T A T C G C G T A C G T A A C T G A C T G A T G C A C G T A C T G A C T G
A C G T A C G T C G T A A T G C C G A T A C G T A G T C C G T A C G T A C G T A C T A G A T C G A C G T A C G T A C G T A C G T

TFAP2B/MA0811.1/Jaspar

Match Rank:10
Score:0.46
Offset:2
Orientation:forward strand
Alignment:GGAGCTTSAAGGCTGG
--TGCCCCAGGGCA--
 A C T G A C T G C G T A A C T G A G T C A G C T A C G T A T C G C G T A C G T A A C T G A C T G A T G C A C G T A C T G A C T G
A C G T A C G T G A C T T A C G A T G C G A T C A G T C A G T C T C G A T C A G T C A G T A C G A T G C C T G A A C G T A C G T