Information for 3-AAKGRTCAGTGWR (Motif 4)

C T G A C G T A A C T G A C T G C T A G C G A T A T G C C G T A A C T G A C G T A C T G C G A T C T A G
Reverse Opposite:
A G T C C G T A A G T C C G T A A G T C A C G T A T C G C G T A A G T C A G T C G T A C A C G T A G C T
p-value:1e-14
log p-value:-3.269e+01
Information Content per bp:1.871
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.94%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets61.8 +/- 28.0bp
Average Position of motif in Background58.8 +/- 34.7bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:1
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----AAKGRTCAGTGWR
ANGNAAAGGTCA-----
 A C G T A C G T A C G T A C G T C T G A C G T A A C T G A C T G C T A G C G A T A T G C C G T A A C T G A C G T A C T G C G A T C T A G
C T G A A C T G C A T G C A G T C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-AAKGRTCAGTGWR
CAAAGGTCAG----
 A C G T C T G A C G T A A C T G A C T G C T A G C G A T A T G C C G T A A C T G A C G T A C T G C G A T C T A G
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T A C G T A C G T A C G T

PB0049.1_Nr2f2_1/Jaspar

Match Rank:3
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----AAKGRTCAGTGWR
TCTCAAAGGTCACGAG-
 A C G T A C G T A C G T A C G T C T G A C G T A A C T G A C T G C T A G C G A T A T G C C G T A A C T G A C G T A C T G C G A T C T A G
C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:4
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AAKGRTCAGTGWR
AGRGGTCA-----
 C T G A C G T A A C T G A C T G C T A G C G A T A T G C C G T A A C T G A C G T A C T G C G A T C T A G
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T A C G T

SOX8/MA0868.1/Jaspar

Match Rank:5
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---AAKGRTCAGTGWR
AACAATGTGCAGTGTT
 A C G T A C G T A C G T C T G A C G T A A C T G A C T G C T A G C G A T A T G C C G T A A C T G A C G T A C T G C G A T C T A G
C G T A C G T A G T A C C T G A C G T A A C G T C T A G C G A T A C T G A G T C C G T A C A T G A C G T A C T G C G A T A G C T

PB0053.1_Rara_1/Jaspar

Match Rank:6
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----AAKGRTCAGTGWR
TCTCAAAGGTCACCTG-
 A C G T A C G T A C G T A C G T C T G A C G T A A C T G A C T G C T A G C G A T A T G C C G T A A C T G A C G T A C T G C G A T C T A G
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G A C G T

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:7
Score:0.58
Offset:2
Orientation:forward strand
Alignment:AAKGRTCAGTGWR---
--AGGTCANTGACCTN
 C T G A C G T A A C T G A C T G C T A G C G A T A T G C C G T A A C T G A C G T A C T G C G A T C T A G A C G T A C G T A C G T
A C G T A C G T T C G A C A T G C A T G A C G T A T G C T C G A C T G A A G C T T A C G T G C A G T A C G A T C A G C T A G T C

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:8
Score:0.58
Offset:2
Orientation:forward strand
Alignment:AAKGRTCAGTGWR
--AGGTCA-----
 C T G A C G T A A C T G A C T G C T A G C G A T A T G C C G T A A C T G A C G T A C T G C G A T C T A G
A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T A C G T

VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer

Match Rank:9
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AAKGRTCAGTGWR-------
NGAGGTCANNGAGTTCANNN
 C T G A C G T A A C T G A C T G C T A G C G A T A T G C C G T A A C T G A C G T A C T G C G A T C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T G A T C A G C T G A C T A G C A T G A C G T A T G C C G T A A T G C G C A T T C A G C T G A A C T G A C G T C A G T A G T C C G T A C A G T C T A G C A T G

NR2F1/MA0017.2/Jaspar

Match Rank:10
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-AAKGRTCAGTGWR
CAAAGGTCAAGGG-
 A C G T C T G A C G T A A C T G A C T G C T A G C G A T A T G C C G T A A C T G A C G T A C T G C G A T C T A G
G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G A C G T