Information for 3-GAAGGTCACTTTTGAG (Motif 3)

A C T G G C T A C G T A A T C G A C T G A C G T A T G C C G T A T A G C A C G T A C G T A G C T C G A T A C T G C T G A C T A G
Reverse Opposite:
A G T C A G C T G T A C G C T A C T G A C G T A G T C A A T C G C G A T A T C G T C G A T A G C A T G C G A C T C G A T G T A C
p-value:1e-14
log p-value:-3.290e+01
Information Content per bp:1.687
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.93%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets74.4 +/- 14.3bp
Average Position of motif in Background63.9 +/- 20.2bp
Strand Bias (log2 ratio + to - strand density)-1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NR4A2/MA0160.1/Jaspar

Match Rank:1
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GAAGGTCACTTTTGAG
-AAGGTCAC-------
 A C T G G C T A C G T A A T C G A C T G A C G T A T G C C G T A T A G C A C G T A C G T A G C T C G A T A C T G C T G A C T A G
A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GAAGGTCACTTTTGAG
TCAAGGTCAN-------
 A C G T A C T G G C T A C G T A A T C G A C T G A C G T A T G C C G T A T A G C A C G T A C G T A G C T C G A T A C T G C T G A C T A G
A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Esrrg/MA0643.1/Jaspar

Match Rank:3
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GAAGGTCACTTTTGAG
TCAAGGTCAT-------
 A C G T A C T G G C T A C G T A A T C G A C T G A C G T A T G C C G T A T A G C A C G T A C G T A G C T C G A T A C T G C T G A C T A G
G A C T T A G C C T G A T C G A C A T G A T C G C A G T A G T C C T G A G C A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:4
Score:0.54
Offset:2
Orientation:forward strand
Alignment:GAAGGTCACTTTTGAG
--AGGTCA--------
 A C T G G C T A C G T A A T C G A C T G A C G T A T G C C G T A T A G C A C G T A C G T A G C T C G A T A C T G C T G A C T A G
A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:5
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GAAGGTCACTTTTGAG
ATCAAGGTCA--------
 A C G T A C G T A C T G G C T A C G T A A T C G A C T G A C G T A T G C C G T A T A G C A C G T A C G T A G C T C G A T A C T G C T G A C T A G
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MEF2C/MA0497.1/Jaspar

Match Rank:6
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:GAAGGTCACTTTTGAG---
----TTCTATTTTTAGNNN
 A C T G G C T A C G T A A T C G A C T G A C G T A T G C C G T A T A G C A C G T A C G T A G C T C G A T A C T G C T G A C T A G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T C A G T A G T C A G C T C T G A G C A T G C A T G A C T G A C T C G A T C T G A C A T G G T A C G C T A G A C T

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:7
Score:0.53
Offset:6
Orientation:reverse strand
Alignment:GAAGGTCACTTTTGAG
------CTATTTTTGG
 A C T G G C T A C G T A A T C G A C T G A C G T A T G C C G T A T A G C A C G T A C G T A G C T C G A T A C T G C T G A C T A G
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G C T G T C A C G A T C G A T A G C T G A C T G C A T C T G A C A T G

MEF2D/MA0773.1/Jaspar

Match Rank:8
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:GAAGGTCACTTTTGAG-
-----TCTATTTATAGN
 A C T G G C T A C G T A A T C G A C T G A C G T A T G C C G T A T A G C A C G T A C G T A G C T C G A T A C T G C T G A C T A G A C G T
A C G T A C G T A C G T A C G T A C G T C A G T A G T C A G C T C G T A C G A T G C A T C G A T G C T A C A G T C T G A C T A G G A C T

MEF2A/MA0052.3/Jaspar

Match Rank:9
Score:0.52
Offset:5
Orientation:reverse strand
Alignment:GAAGGTCACTTTTGAG-
-----TCTATTTTTAGA
 A C T G G C T A C G T A A T C G A C T G A C G T A T G C C G T A T A G C A C G T A C G T A G C T C G A T A C T G C T G A C T A G A C G T
A C G T A C G T A C G T A C G T A C G T C A G T G A T C C A G T C T G A C G A T C G A T C G A T G C A T C G A T C T G A C A T G G T C A

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:10
Score:0.52
Offset:0
Orientation:forward strand
Alignment:GAAGGTCACTTTTGAG
TRAGGTCA--------
 A C T G G C T A C G T A A T C G A C T G A C G T A T G C C G T A T A G C A C G T A C G T A G C T C G A T A C T G C T G A C T A G
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T