Information for 12-TGSTCATTACTCA (Motif 26)

C G A T C A T G A T G C G C A T A G T C C G T A A C G T A C G T G T C A T G A C A G C T A G T C G C T A
Reverse Opposite:
C G A T A C T G T C G A A C T G C A G T T G C A T G C A A C G T T A C G C G T A T A C G G T A C G C T A
p-value:1e-8
log p-value:-2.047e+01
Information Content per bp:1.583
Number of Target Sequences with motif62.0
Percentage of Target Sequences with motif8.23%
Number of Background Sequences with motif1713.7
Percentage of Background Sequences with motif3.52%
Average Position of motif in Targets48.9 +/- 26.3bp
Average Position of motif in Background49.9 +/- 26.3bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:1
Score:0.76
Offset:3
Orientation:forward strand
Alignment:TGSTCATTACTCA
---TCATCAATCA
 C G A T C A T G A T G C G C A T A G T C C G T A A C G T A C G T G T C A T G A C A G C T A G T C G C T A
A C G T A C G T A C G T G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:2
Score:0.76
Offset:1
Orientation:reverse strand
Alignment:TGSTCATTACTCA
-RGCCATYAATCA
 C G A T C A T G A T G C G C A T A G T C C G T A A C G T A C G T G T C A T G A C A G C T A G T C G C T A
A C G T C T A G T A C G G A T C T G A C T C G A A C G T G A C T G C T A T C G A A G C T G A T C G C T A

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:3
Score:0.71
Offset:2
Orientation:forward strand
Alignment:TGSTCATTACTCA-
--GYCATCMATCAT
 C G A T C A T G A T G C G C A T A G T C C G T A A C G T A C G T G T C A T G A C A G C T A G T C G C T A A C G T
A C G T A C G T T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T

Hoxa9/MA0594.1/Jaspar

Match Rank:4
Score:0.65
Offset:2
Orientation:forward strand
Alignment:TGSTCATTACTCA
--GCCATAAATCA
 C G A T C A T G A T G C G C A T A G T C C G T A A C G T A C G T G T C A T G A C A G C T A G T C G C T A
A C G T A C G T T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A

JUND/MA0491.1/Jaspar

Match Rank:5
Score:0.65
Offset:4
Orientation:reverse strand
Alignment:TGSTCATTACTCA--
----NATGAGTCACN
 C G A T C A T G A T G C G C A T A G T C C G T A A C G T A C G T G T C A T G A C A G C T A G T C G C T A A C G T A C G T
A C G T A C G T A C G T A C G T A T C G T C G A A C G T A C T G C G T A T A C G A C G T A G T C C G T A A G T C G A T C

NFE2/MA0841.1/Jaspar

Match Rank:6
Score:0.64
Offset:4
Orientation:forward strand
Alignment:TGSTCATTACTCA--
----CATGACTCATC
 C G A T C A T G A T G C G C A T A G T C C G T A A C G T A C G T G T C A T G A C A G C T A G T C G C T A A C G T A C G T
A C G T A C G T A C G T A C G T T G A C T C G A G A C T A C T G G T C A T A G C A G C T G A T C T G C A A G C T A T G C

JDP2/MA0655.1/Jaspar

Match Rank:7
Score:0.64
Offset:5
Orientation:forward strand
Alignment:TGSTCATTACTCA-
-----ATGACTCAT
 C G A T C A T G A T G C G C A T A G T C C G T A A C G T A C G T G T C A T G A C A G C T A G T C G C T A A C G T
A C G T A C G T A C G T A C G T A C G T T C G A G A C T A C T G C G T A T A G C C A G T G T A C C G T A G A C T

PBX1/MA0070.1/Jaspar

Match Rank:8
Score:0.63
Offset:3
Orientation:forward strand
Alignment:TGSTCATTACTCA--
---CCATCAATCAAA
 C G A T C A T G A T G C G C A T A G T C C G T A A C G T A C G T G T C A T G A C A G C T A G T C G C T A A C G T A C G T
A C G T A C G T A C G T G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:9
Score:0.62
Offset:1
Orientation:forward strand
Alignment:TGSTCATTACTCA
-GGCCATAAATCA
 C G A T C A T G A T G C G C A T A G T C C G T A A C G T A C G T G T C A T G A C A G C T A G T C G C T A
A C G T C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A

FOS/MA0476.1/Jaspar

Match Rank:10
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:TGSTCATTACTCA--
----NATGAGTCANN
 C G A T C A T G A T G C G C A T A G T C C G T A A C G T A C G T G T C A T G A C A G C T A G T C G C T A A C G T A C G T
A C G T A C G T A C G T A C G T T C G A T C G A A C G T A C T G C G T A T A C G A C G T G T A C C G T A A T G C G T C A