Information for 8-AGTKGGWGMTTTGCAG (Motif 11)

G T C A C A T G A C G T C A T G A T C G A C T G C G T A C A T G G T A C C G A T C G A T A C G T C T A G A T G C C G T A A C T G
Reverse Opposite:
A G T C A C G T A T C G A G T C T G C A G C T A C G T A A C T G G A T C C G A T A G T C A T G C G T A C T C G A G T A C A C G T
p-value:1e-12
log p-value:-2.808e+01
Information Content per bp:1.710
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.93%
Number of Background Sequences with motif4.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets39.6 +/- 15.9bp
Average Position of motif in Background41.8 +/- 16.9bp
Strand Bias (log2 ratio + to - strand density)-2.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIA/MA0670.1/Jaspar

Match Rank:1
Score:0.55
Offset:7
Orientation:reverse strand
Alignment:AGTKGGWGMTTTGCAG-
-------NNTTGGCANN
 G T C A C A T G A C G T C A T G A T C G A C T G C G T A C A T G G T A C C G A T C G A T A C G T C T A G A T G C C G T A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.53
Offset:8
Orientation:reverse strand
Alignment:AGTKGGWGMTTTGCAG
--------CTTGGCAA
 G T C A C A T G A C G T C A T G A T C G A C T G C G T A C A T G G T A C C G A T C G A T A C G T C T A G A T G C C G T A A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.52
Offset:5
Orientation:reverse strand
Alignment:AGTKGGWGMTTTGCAG-
-----NTGATTGACAGN
 G T C A C A T G A C G T C A T G A T C G A C T G C G T A C A T G G T A C C G A T C G A T A C G T C T A G A T G C C G T A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G

GFY(?)/Promoter/Homer

Match Rank:4
Score:0.52
Offset:5
Orientation:reverse strand
Alignment:AGTKGGWGMTTTGCAG-
-----GGGAATTGTAGT
 G T C A C A T G A C G T C A T G A T C G A C T G C G T A C A T G G T A C C G A T C G A T A C G T C T A G A T G C C G T A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T C A T G T C A G T C A G T C G A T C G A G C A T A C G T A C T G A C G T C T G A A T C G A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:5
Score:0.52
Offset:5
Orientation:reverse strand
Alignment:AGTKGGWGMTTTGCAG-
-----BTGABTGACAGS
 G T C A C A T G A C G T C A T G A T C G A C T G C G T A C A T G G T A C C G A T C G A T A C G T C T A G A T G C C G T A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C

MEIS2/MA0774.1/Jaspar

Match Rank:6
Score:0.51
Offset:9
Orientation:forward strand
Alignment:AGTKGGWGMTTTGCAG-
---------TTGACAGC
 G T C A C A T G A C G T C A T G A T C G A C T G C G T A C A T G G T A C C G A T C G A T A C G T C T A G A T G C C G T A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.51
Offset:8
Orientation:forward strand
Alignment:AGTKGGWGMTTTGCAG--
--------ATTTGCATAA
 G T C A C A T G A C G T C A T G A T C G A C T G C G T A C A T G G T A C C G A T C G A T A C G T C T A G A T G C C G T A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A G C T C G A T C T A G G T A C C G T A A G C T C G T A G C T A

POL009.1_DCE_S_II/Jaspar

Match Rank:8
Score:0.50
Offset:11
Orientation:reverse strand
Alignment:AGTKGGWGMTTTGCAG-
-----------CACAGN
 G T C A C A T G A C G T C A T G A T C G A C T G C G T A C A T G G T A C C G A T C G A T A C G T C T A G A T G C C G T A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C

RREB1/MA0073.1/Jaspar

Match Rank:9
Score:0.50
Offset:-4
Orientation:reverse strand
Alignment:----AGTKGGWGMTTTGCAG
NGGGGGGGGGTGGTTTGGGG
 A C G T A C G T A C G T A C G T G T C A C A T G A C G T C A T G A T C G A C T G C G T A C A T G G T A C C G A T C G A T A C G T C T A G A T G C C G T A A C T G
A C G T A T C G C A T G A C T G C A T G A C T G A C T G A C T G A C T G A C T G A C G T A C T G C A T G A C G T A C G T A C G T A C T G A C T G A C T G A C T G

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:10
Score:0.49
Offset:8
Orientation:reverse strand
Alignment:AGTKGGWGMTTTGCAG--
--------ATTTGCATAT
 G T C A C A T G A C G T C A T G A T C G A C T G C G T A C A T G G T A C C G A T C G A T A C G T C T A G A T G C C G T A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A C G A T G A C T A C G T C T A G G A T C G T C A C G A T C G T A C A G T