Information for 13-ATGGTTAGTA (Motif 23)

C G T A A C G T A C T G A C T G C G A T A C G T C G T A A C T G A C G T C G T A
Reverse Opposite:
A C G T C G T A A G T C A C G T C G T A C G T A A G T C A G T C C G T A A C G T
p-value:1e-5
log p-value:-1.207e+01
Information Content per bp:1.962
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.39%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets36.2 +/- 27.7bp
Average Position of motif in Background63.9 +/- 38.6bp
Strand Bias (log2 ratio + to - strand density)-2.0
Multiplicity (# of sites on avg that occur together)1.67
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.61
Offset:0
Orientation:forward strand
Alignment:ATGGTTAGTA-
CAGGTAAGTAT
 C G T A A C G T A C T G A C T G C G A T A C G T C G T A A C T G A C G T C G T A A C G T
T G A C C G T A C T A G A C T G A C G T C T G A C G T A C T A G C G A T C T G A G A C T

Sox5/MA0087.1/Jaspar

Match Rank:2
Score:0.58
Offset:0
Orientation:forward strand
Alignment:ATGGTTAGTA
ATTGTTA---
 C G T A A C G T A C T G A C T G C G A T A C G T C G T A A C T G A C G T C G T A
C G T A A C G T A C G T C T A G A G C T G A C T C G A T A C G T A C G T A C G T

PB0172.1_Sox1_2/Jaspar

Match Rank:3
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----ATGGTTAGTA
CTATAATTGTTAGCG
 A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G A C T G C G A T A C G T C G T A A C T G A C G T C G T A
G T A C A G C T C T G A G A C T G C T A C T G A G A C T A G C T T A C G A C G T A C G T T G C A A C G T A G T C T A C G

FOXD1/MA0031.1/Jaspar

Match Rank:4
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:ATGGTTAGTA
ATGTTTAC--
 C G T A A C G T A C T G A C T G C G A T A C G T C G T A A C T G A C G T C G T A
G C T A A C G T C A T G A C G T A C G T A C G T C G T A A G T C A C G T A C G T

Foxq1/MA0040.1/Jaspar

Match Rank:5
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--ATGGTTAGTA
TATTGTTTATT-
 A C G T A C G T C G T A A C G T A C T G A C T G C G A T A C G T C G T A A C T G A C G T C G T A
G A C T C T G A G C A T C G A T A C T G A C G T A C G T A C G T C T G A A C G T C G A T A C G T

PB0194.1_Zbtb12_2/Jaspar

Match Rank:6
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-ATGGTTAGTA----
TATCATTAGAACGCT
 A C G T C G T A A C G T A C T G A C T G C G A T A C G T C G T A A C T G A C G T C G T A A C G T A C G T A C G T A C G T
G C A T T G C A G A C T A T G C T C G A C G A T C A G T C T G A C A T G G C T A G T C A G T A C A C T G A G T C C G A T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:7
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-ATGGTTAGTA-
TATGCWAATBAV
 A C G T C G T A A C G T A C T G A C T G C G A T A C G T C G T A A C T G A C G T C G T A A C G T
G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G

PB0062.1_Sox12_1/Jaspar

Match Rank:8
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--ATGGTTAGTA--
TAATTGTTCTAAAC
 A C G T A C G T C G T A A C G T A C T G A C T G C G A T A C G T C G T A A C T G A C G T C G T A A C G T A C G T
G A C T G C T A C G T A A C G T C G A T C T A G C G A T G A C T T G A C G C A T G T C A C G T A G C T A G T A C

PB0109.1_Bbx_2/Jaspar

Match Rank:9
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--ATGGTTAGTA-----
TGATTGTTAACAGTTGG
 A C G T A C G T C G T A A C G T A C T G A C T G C G A T A C G T C G T A A C T G A C G T C G T A A C G T A C G T A C G T A C G T A C G T
G A C T T C A G G C T A G A C T A C G T C A T G C A G T A G C T T C G A G T C A G T A C T C G A A T C G G C A T A C G T C T A G T C A G

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:10
Score:0.53
Offset:0
Orientation:forward strand
Alignment:ATGGTTAGTA
ATGAATATTC
 C G T A A C G T A C T G A C T G C G A T A C G T C G T A A C T G A C G T C G T A
G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C