Information for 1-RGGTCACHAVGKTCAG (Motif 2)

C T A G A T C G A C T G A C G T A G T C C G T A A T G C G C T A C T G A T C G A A C T G C A G T A C G T A T G C T C G A A C T G
Reverse Opposite:
T G A C A G C T A T C G T G C A G T C A A G T C A G C T A G C T C G A T T A C G A C G T A C T G T G C A G T A C A T G C A G T C
p-value:1e-36
log p-value:-8.505e+01
Information Content per bp:1.673
Number of Target Sequences with motif33.0
Percentage of Target Sequences with motif4.25%
Number of Background Sequences with motif64.5
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets56.9 +/- 24.4bp
Average Position of motif in Background46.5 +/- 29.7bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer

Match Rank:1
Score:0.90
Offset:-2
Orientation:forward strand
Alignment:--RGGTCACHAVGKTCAG--
NGAGGTCANNGAGTTCANNN
 A C G T A C G T C T A G A T C G A C T G A C G T A G T C C G T A A T G C G C T A C T G A T C G A A C T G C A G T A C G T A T G C T C G A A C T G A C G T A C G T
C T G A T C A G C T G A C T A G C A T G A C G T A T G C C G T A A T G C G C A T T C A G C T G A A C T G A C G T C A G T A G T C C G T A C A G T C T A G C A T G

RXRA::VDR/MA0074.1/Jaspar

Match Rank:2
Score:0.85
Offset:0
Orientation:forward strand
Alignment:RGGTCACHAVGKTCAG
GGGTCAACGAGTTCA-
 C T A G A T C G A C T G A C G T A G T C C G T A A T G C G C T A C T G A T C G A A C T G C A G T A C G T A T G C T C G A A C T G
C T A G A C T G A C T G A C G T A G T C C T G A G C A T A G T C C T A G C T A G A C T G A C G T C G A T A G T C T C G A A C G T

Vdr/MA0693.1/Jaspar

Match Rank:3
Score:0.79
Offset:-1
Orientation:forward strand
Alignment:-RGGTCACHAVGKTCAG
GAGTTCATTGAGTTCA-
 A C G T C T A G A T C G A C T G A C G T A G T C C G T A A T G C G C T A C T G A T C G A A C T G C A G T A C G T A T G C T C G A A C T G
T C A G T C G A C A T G A C G T A C G T A G T C C T G A G A C T G A C T T C A G T C G A C T A G A C G T A C G T A G T C C T G A A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:4
Score:0.71
Offset:0
Orientation:forward strand
Alignment:RGGTCACHAVGKTCAG
AGGTCA----------
 C T A G A T C G A C T G A C G T A G T C C G T A A T G C G C T A C T G A T C G A A C T G C A G T A C G T A T G C T C G A A C T G
C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ESR2/MA0258.2/Jaspar

Match Rank:5
Score:0.70
Offset:0
Orientation:forward strand
Alignment:RGGTCACHAVGKTCAG
AGGTCACCCTGACCT-
 C T A G A T C G A C T G A C G T A G T C C G T A A T G C G C T A C T G A T C G A A C T G C A G T A C G T A T G C T C G A A C T G
C T G A C A T G C T A G A C G T A T G C C G T A A T G C T G A C T A G C G C A T T C A G G T C A G A T C G A T C G A C T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:6
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--RGGTCACHAVGKTCAG
AGRGGTCA----------
 A C G T A C G T C T A G A T C G A C T G A C G T A G T C C G T A A T G C G C T A C T G A T C G A A C T G C A G T A C G T A T G C T C G A A C T G
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:7
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--RGGTCACHAVGKTCAG
TRAGGTCA----------
 A C G T A C G T C T A G A T C G A C T G A C G T A G T C C G T A A T G C G C T A C T G A T C G A A C T G C A G T A C G T A T G C T C G A A C T G
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:8
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-RGGTCACHAVGKTCAG
AAGGTCAC---------
 A C G T C T A G A T C G A C T G A C G T A G T C C G T A A T G C G C T A C T G A T C G A A C T G C A G T A C G T A T G C T C G A A C T G
C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0057.1_Rxra_1/Jaspar

Match Rank:9
Score:0.65
Offset:-6
Orientation:reverse strand
Alignment:------RGGTCACHAVGKTCAG
NTNNNGGGGTCANGNNN-----
 A C G T A C G T A C G T A C G T A C G T A C G T C T A G A T C G A C T G A C G T A G T C C G T A A T G C G C T A C T G A T C G A A C T G C A G T A C G T A T G C T C G A A C T G
T C G A C A G T A G C T C T G A G C T A T C A G C T A G A C T G A C T G A C G T A G T C C T G A G T A C T C A G C G T A T A G C G C T A A C G T A C G T A C G T A C G T A C G T

NR2F1/MA0017.2/Jaspar

Match Rank:10
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---RGGTCACHAVGKTCAG
CAAAGGTCAAGGG------
 A C G T A C G T A C G T C T A G A T C G A C T G A C G T A G T C C G T A A T G C G C T A C T G A T C G A A C T G C A G T A C G T A T G C T C G A A C T G
G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G A C G T A C G T A C G T A C G T A C G T A C G T