Information for 2-CAATCCTTCA (Motif 9)

G T A C T C G A C G T A A C G T A G T C A T G C A G C T A C G T A G T C C G T A
Reverse Opposite:
C G A T A C T G C G T A C T G A A T C G T C A G G T C A A C G T A G C T A C T G
p-value:1e-11
log p-value:-2.736e+01
Information Content per bp:1.851
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.97%
Number of Background Sequences with motif52.0
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets46.2 +/- 23.2bp
Average Position of motif in Background51.6 +/- 27.3bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:1
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-CAATCCTTCA-
GYCATCMATCAT
 A C G T G T A C T C G A C G T A A C G T A G T C A T G C A G C T A C G T A G T C C G T A A C G T
T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:2
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CAATCCTTCA
RGCCATYAATCA
 A C G T A C G T G T A C T C G A C G T A A C G T A G T C A T G C A G C T A C G T A G T C C G T A
C T A G T A C G G A T C T G A C T C G A A C G T G A C T G C T A T C G A A G C T G A T C G C T A

PB0028.1_Hbp1_1/Jaspar

Match Rank:3
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CAATCCTTCA----
NNCATTCATTCATNNN
 A C G T A C G T G T A C T C G A C G T A A C G T A G T C A T G C A G C T A C G T A G T C C G T A A C G T A C G T A C G T A C G T
T C G A G A C T G T A C C G T A A G C T G A C T T G A C C G T A C G A T G C A T A T G C C G T A C G A T G C T A A C T G C G A T

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:4
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CAATCCTTCA
TCATCAATCA
 G T A C T C G A C G T A A C G T A G T C A T G C A G C T A C G T A G T C C G T A
G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A

POL008.1_DCE_S_I/Jaspar

Match Rank:5
Score:0.61
Offset:4
Orientation:forward strand
Alignment:CAATCCTTCA
----GCTTCC
 G T A C T C G A C G T A A C G T A G T C A T G C A G C T A C G T A G T C C G T A
A C G T A C G T A C G T A C G T A C T G A T G C A G C T A C G T A T G C A T G C

PBX1/MA0070.1/Jaspar

Match Rank:6
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CAATCCTTCA--
CCATCAATCAAA
 G T A C T C G A C G T A A C G T A G T C A T G C A G C T A C G T A G T C C G T A A C G T A C G T
G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:7
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CAATCCTTCA
NYTAATCCYB--
 A C G T A C G T G T A C T C G A C G T A A C G T A G T C A T G C A G C T A C G T A G T C C G T A
A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T A C G T A C G T

PB0173.1_Sox21_2/Jaspar

Match Rank:8
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---CAATCCTTCA----
AATCAATTGTTCCGCTA
 A C G T A C G T A C G T G T A C T C G A C G T A A C G T A G T C A T G C A G C T A C G T A G T C C G T A A C G T A C G T A C G T A C G T
T G A C T C A G A G C T A T G C G C T A C G T A A G C T C G A T A T C G C G A T A G C T A T G C T G A C A C T G G A T C C A G T T C G A

Hoxa9/MA0594.1/Jaspar

Match Rank:9
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CAATCCTTCA
GCCATAAATCA
 A C G T G T A C T C G A C G T A A C G T A G T C A T G C A G C T A C G T A G T C C G T A
T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A

PB0065.1_Sox15_1/Jaspar

Match Rank:10
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----CAATCCTTCA---
ANNTCTATTGTTCNNNA
 A C G T A C G T A C G T A C G T G T A C T C G A C G T A A C G T A G T C A T G C A G C T A C G T A G T C C G T A A C G T A C G T A C G T
C G T A C G T A T C G A A G C T G A T C G C A T C G T A C G A T C G A T C T A G C G A T G A C T G T A C G C T A G T A C G A C T C G T A