Information for 20-GACATGTCACTGAGAG (Motif 43)

A C T G C G T A A G T C G T C A A C G T A C T G A C G T A T G C C G T A A T G C A C G T A C T G C G T A A C T G T G C A A C T G
Reverse Opposite:
A G T C A C G T A G T C A C G T A G T C C G T A A T C G A C G T A T C G C G T A A G T C G T C A A C G T A C T G A C G T A G T C
p-value:1e-6
log p-value:-1.579e+01
Information Content per bp:1.929
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.61%
Number of Background Sequences with motif3.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets51.8 +/- 20.5bp
Average Position of motif in Background56.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0140.1_Pknox1/Jaspar

Match Rank:1
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---GACATGTCACTGAGAG
AAAGACCTGTCAATCC---
 A C G T A C G T A C G T A C T G C G T A A G T C G T C A A C G T A C T G A C G T A T G C C G T A A T G C A C G T A C T G C G T A A C T G T G C A A C T G
C G T A C T G A T G C A A T C G C T G A A T G C T G A C A G C T C T A G G C A T A G T C C G T A G C T A G C A T T G A C T G A C A C G T A C G T A C G T

USF2/MA0526.1/Jaspar

Match Rank:2
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GACATGTCACTGAGAG
GTCATGTGACC-----
 A C T G C G T A A G T C G T C A A C G T A C T G A C G T A T G C C G T A A T G C A C G T A C T G C G T A A C T G T G C A A C T G
T C A G A G C T A G T C C G T A A G C T A C T G A C G T A C T G T C G A A G T C G A T C A C G T A C G T A C G T A C G T A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.56
Offset:2
Orientation:forward strand
Alignment:GACATGTCACTGAGAG
--NCTGTCAATCAN--
 A C T G C G T A A G T C G T C A A C G T A C T G A C G T A T G C C G T A A T G C A C G T A C T G C G T A A C T G T G C A A C T G
A C G T A C G T T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A A C G T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:4
Score:0.56
Offset:2
Orientation:forward strand
Alignment:GACATGTCACTGAGAG
--SCTGTCAVTCAV--
 A C T G C G T A A G T C G T C A A C G T A C T G A C G T A T G C C G T A A T G C A C G T A C T G C G T A A C T G T G C A A C T G
A C G T A C G T T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A A C G T A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:5
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GACATGTCACTGAGAG
-GSCTGTCACTCA---
 A C T G C G T A A G T C G T C A A C G T A C T G A C G T A T G C C G T A A T G C A C G T A C T G C G T A A C T G T G C A A C T G
A C G T C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A A C G T A C G T A C G T

CREB3/MA0638.1/Jaspar

Match Rank:6
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GACATGTCACTGAGAG
GTGCCACGTCATCA----
 A C G T A C G T A C T G C G T A A G T C G T C A A C G T A C T G A C G T A T G C C G T A A T G C A C G T A C T G C G T A A C T G T G C A A C T G
T C A G A G C T C A T G G T A C A T G C C G T A A G T C C T A G G A C T T G A C C T G A A G C T G T A C T C G A A C G T A C G T A C G T A C G T

XBP1/MA0844.1/Jaspar

Match Rank:7
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---GACATGTCACTGAGAG
AATGCCACGTCATC-----
 A C G T A C G T A C G T A C T G C G T A A G T C G T C A A C G T A C T G A C G T A T G C C G T A A T G C A C G T A C T G C G T A A C T G T G C A A C T G
C G T A C T G A A C G T C A T G G T A C A G T C C T G A G A T C C T A G A G C T T G A C C T G A A C G T A G T C A C G T A C G T A C G T A C G T A C G T

PH0141.1_Pknox2/Jaspar

Match Rank:8
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---GACATGTCACTGAGAG
AAGCACCTGTCAATAT---
 A C G T A C G T A C G T A C T G C G T A A G T C G T C A A C G T A C T G A C G T A T G C C G T A A T G C A C G T A C T G C G T A A C T G T G C A A C T G
G C T A C T G A T C A G A T G C T C G A T A G C G T A C A G C T A C T G G A C T A G T C C T G A G T C A G C A T G C T A A G C T A C G T A C G T A C G T

MEIS3/MA0775.1/Jaspar

Match Rank:9
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:GACATGTCACTGAGAG
--CCTGTCAA------
 A C T G C G T A A G T C G T C A A C G T A C T G A C G T A T G C C G T A A T G C A C G T A C T G C G T A A C T G T G C A A C T G
A C G T A C G T T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A A C G T A C G T A C G T A C G T A C G T A C G T

PH0082.1_Irx2/Jaspar

Match Rank:10
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----GACATGTCACTGAGAG
TAAATACATGTAAAATT---
 A C G T A C G T A C G T A C G T A C T G C G T A A G T C G T C A A C G T A C T G A C G T A T G C C G T A A T G C A C G T A C T G C G T A A C T G T G C A A C T G
C G A T C G T A C G T A C T G A C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A C G T A C T G A C G T A A C G T G C A T A C G T A C G T A C G T