Information for 13-AGTGGTTCATGGC (Motif 23)

G C T A C T A G C G A T A T C G A C T G A C G T A C G T T A G C G T C A C A G T A C T G C T A G G T A C
Reverse Opposite:
A C T G A G T C A G T C G T C A A C G T A T C G G T C A C G T A T G A C T A G C C G T A A G T C C G A T
p-value:1e-9
log p-value:-2.145e+01
Information Content per bp:1.744
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.67%
Number of Background Sequences with motif52.7
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets63.3 +/- 21.7bp
Average Position of motif in Background49.7 +/- 28.0bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxa9/MA0594.1/Jaspar

Match Rank:1
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:AGTGGTTCATGGC
--TGATTTATGGC
 G C T A C T A G C G A T A T C G A C T G A C G T A C G T T A G C G T C A C A G T A C T G C T A G G T A C
A C G T A C G T C G A T C T A G G C T A A C G T C G A T A C G T C G T A A G C T C A T G C T A G A T G C

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:2
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:AGTGGTTCATGGC-
--TGATTTATGGCC
 G C T A C T A G C G A T A T C G A C T G A C G T A C G T T A G C G T C A C A G T A C T G C T A G G T A C A C G T
A C G T A C G T C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:3
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--AGTGGTTCATGGC
NNTGTGGTTT-----
 A C G T A C G T G C T A C T A G C G A T A T C G A C T G A C G T A C G T T A G C G T C A C A G T A C T G C T A G G T A C
A C G T G A C T C A G T A C T G G A C T A C T G A C T G A G C T A G C T C G A T A C G T A C G T A C G T A C G T A C G T

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:4
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:AGTGGTTCATGGC-
--TGATTTATGGCC
 G C T A C T A G C G A T A T C G A C T G A C G T A C G T T A G C G T C A C A G T A C T G C T A G G T A C A C G T
A C G T A C G T C G A T C T A G G C T A C G A T C A G T A C G T G T C A A G C T C A T G T C A G A G T C A G T C

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:5
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--AGTGGTTCATGGC
GCTGTGGTTT-----
 A C G T A C G T G C T A C T A G C G A T A T C G A C T G A C G T A C G T T A G C G T C A C A G T A C T G C T A G G T A C
A C T G G A T C G A C T A C T G A C G T C A T G A C T G A C G T A G C T C G A T A C G T A C G T A C G T A C G T A C G T

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:6
Score:0.55
Offset:2
Orientation:forward strand
Alignment:AGTGGTTCATGGC-
--TGATTRATGGCY
 G C T A C T A G C G A T A T C G A C T G A C G T A C G T T A G C G T C A C A G T A C T G C T A G G T A C A C G T
A C G T A C G T C G A T C T A G T C G A A G C T C G A T C T G A C G T A A G C T A C T G C T A G A T G C G A T C

Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.55
Offset:5
Orientation:reverse strand
Alignment:AGTGGTTCATGGC--
-----TTCCNGGAAG
 G C T A C T A G C G A T A T C G A C T G A C G T A C G T T A G C G T C A C A G T A C T G C T A G G T A C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C A T C A G T T G A C A G T C T A G C T C A G C A T G G T C A C T G A T C A G

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:AGTGGTTCATGGC-
----GTTAATGGCC
 G C T A C T A G C G A T A T C G A C T G A C G T A C G T T A G C G T C A C A G T A C T G C T A G G T A C A C G T
A C G T A C G T A C G T A C G T A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C

Hoxc9/MA0485.1/Jaspar

Match Rank:9
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:AGTGGTTCATGGC-
-NTGATTTATGGCC
 G C T A C T A G C G A T A T C G A C T G A C G T A C G T T A G C G T C A C A G T A C T G C T A G G T A C A C G T
A C G T T C A G C G A T C T A G C G T A A C G T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:10
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:AGTGGTTCATGGC
--TGATTGATGA-
 G C T A C T A G C G A T A T C G A C T G A C G T A C G T T A G C G T C A C A G T A C T G C T A G G T A C
A C G T A C G T C G A T T C A G G T C A A G C T C G A T C T A G C G T A A C G T C A T G C T G A A C G T