Information for 10-GCTGABCTGAGCT (Motif 17)

C T A G A G T C A C G T C T A G C T G A A C T G A G T C A C G T A C T G C G T A A C T G A G T C A G C T
Reverse Opposite:
C T G A C T A G A G T C A C G T G T A C C G T A A C T G T A G C A G C T A G T C C G T A A C T G A G T C
p-value:1e-10
log p-value:-2.364e+01
Information Content per bp:1.847
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.21%
Number of Background Sequences with motif14.6
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets43.0 +/- 27.9bp
Average Position of motif in Background46.3 +/- 29.5bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:GCTGABCTGAGCT
-CTGACCTTTG--
 C T A G A G T C A C G T C T A G C T G A A C T G A G T C A C G T A C T G C G T A A C T G A G T C A G C T
A C G T A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:2
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:GCTGABCTGAGCT
--TGACCTYA---
 C T A G A G T C A C G T C T A G C T G A A C T G A G T C A C G T A C T G C G T A A C T G A G T C A G C T
A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:3
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GCTGABCTGAGCT
-GTGACCTT----
 C T A G A G T C A C G T C T A G C T G A A C T G A G T C A C G T A C T G C G T A A C T G A G T C A G C T
A C G T A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T A C G T A C G T A C G T A C G T

THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer

Match Rank:4
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:GCTGABCTGAGCT----
--TGWCCTCARNTGACC
 C T A G A G T C A C G T C T A G C T G A A C T G A G T C A C G T A C T G C G T A A C T G A G T C A G C T A C G T A C G T A C G T A C G T
A C G T A C G T G C A T T A C G C G T A G T A C A G T C G A C T A G T C T C G A T C A G T C G A C G A T T C A G T G C A G T A C G A T C

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:5
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:GCTGABCTGAGCT
--TGACCT-----
 C T A G A G T C A C G T C T A G C T G A A C T G A G T C A C G T A C T G C G T A A C T G A G T C A G C T
A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T A C G T A C G T

SREBF2/MA0596.1/Jaspar

Match Rank:6
Score:0.54
Offset:1
Orientation:forward strand
Alignment:GCTGABCTGAGCT
-ATGGGGTGAT--
 C T A G A G T C A C G T C T A G C T G A A C T G A G T C A C G T A C T G C G T A A C T G A G T C A G C T
A C G T T C G A A C G T A T C G C T A G A T C G T A C G A C G T A C T G C G T A A G C T A C G T A C G T

SREBF1/MA0595.1/Jaspar

Match Rank:7
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:GCTGABCTGAGCT
-GTGGGGTGAT--
 C T A G A G T C A C G T C T A G C T G A A C T G A G T C A C G T A C T G C G T A A C T G A G T C A G C T
A C G T T C A G A C G T A T C G C T A G A T C G A T C G A C G T A C T G C G T A A G C T A C G T A C G T

NRL/MA0842.1/Jaspar

Match Rank:8
Score:0.53
Offset:-5
Orientation:forward strand
Alignment:-----GCTGABCTGAGCT
AATTTGCTGAC-------
 A C G T A C G T A C G T A C G T A C G T C T A G A G T C A C G T C T A G C T G A A C T G A G T C A C G T A C T G C G T A A C T G A G T C A G C T
C G T A C G T A G C A T G C A T G A C T T C A G G T A C G C A T C A T G G C T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:GCTGABCTGAGCT
-GTGGCGTGACNG
 C T A G A G T C A C G T C T A G C T G A A C T G A G T C A C G T A C T G C G T A A C T G A G T C A G C T
A C G T T C A G A C G T C A T G A C T G A T G C A T C G A C G T A T C G C T G A A G T C G A T C C A T G

NR2F1/MA0017.2/Jaspar

Match Rank:10
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--GCTGABCTGAGCT
CNNTTGACCTTTG--
 A C G T A C G T C T A G A G T C A C G T C T A G C T G A A C T G A G T C A C G T A C T G C G T A A C T G A G T C A G C T
G A T C A G T C A G T C C A G T A G C T A C T G C G T A A G T C A T G C A G C T G A C T C G A T C A T G A C G T A C G T