Information for 11-ATAAAATGCTTRT (Motif 13)

C G T A G C A T C G T A T C G A C G T A C G T A C G A T C T A G A T G C G C A T A C G T T C A G C G A T
Reverse Opposite:
C G T A A G T C C G T A C G T A A T C G A G T C G C T A G A C T A C G T A G C T C G A T C G T A C G A T
p-value:1e-9
log p-value:-2.301e+01
Information Content per bp:1.701
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif2.63%
Number of Background Sequences with motif205.5
Percentage of Background Sequences with motif0.45%
Average Position of motif in Targets43.2 +/- 22.5bp
Average Position of motif in Background50.1 +/- 30.5bp
Strand Bias (log2 ratio + to - strand density)-1.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0005.1_Barhl1/Jaspar

Match Rank:1
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--ATAAAATGCTTRT-
GNNTTAATTGGTTGTT
 A C G T A C G T C G T A G C A T C G T A T C G A C G T A C G T A C G A T C T A G A T G C G C A T A C G T T C A G C G A T A C G T
C A T G G C T A T G C A G A C T C G A T C G T A C G T A C G A T A G C T C T A G T A C G G A C T A G C T C A T G G A C T C A G T

Hmx2/MA0897.1/Jaspar

Match Rank:2
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----ATAAAATGCTTRT
ATTCNTTAATTGCTTGT
 A C G T A C G T A C G T A C G T C G T A G C A T C G T A T C G A C G T A C G T A C G A T C T A G A T G C G C A T A C G T T C A G C G A T
G C T A G A C T A C G T A G T C C G A T G C A T G C A T C T G A C G T A A C G T A G C T C A T G A G T C A G C T A C G T A T C G A G C T

PH0042.1_Hmx2/Jaspar

Match Rank:3
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----ATAAAATGCTTRT
ATTCNTTAATTGCTTGT
 A C G T A C G T A C G T A C G T C G T A G C A T C G T A T C G A C G T A C G T A C G A T C T A G A T G C G C A T A C G T T C A G C G A T
G C T A G A C T A C G T A G T C C G A T G C A T G C A T C T G A C G T A A C G T A G C T C A T G A G T C A G C T A C G T A T C G A G C T

PH0006.1_Barhl2/Jaspar

Match Rank:4
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--ATAAAATGCTTRT-
NNNTTAATTGGTTTTT
 A C G T A C G T C G T A G C A T C G T A T C G A C G T A C G T A C G A T C T A G A T G C G C A T A C G T T C A G C G A T A C G T
C G A T C G A T T A G C G A C T C G A T C G T A C G T A C G A T G A C T C T A G C T A G A G C T G A C T C A G T C A G T C A G T

Hmx3/MA0898.1/Jaspar

Match Rank:5
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----ATAAAATGCTTRT
ATTNNTTAATTGCTTGT
 A C G T A C G T A C G T A C G T C G T A G C A T C G T A T C G A C G T A C G T A C G A T C T A G A T G C G C A T A C G T T C A G C G A T
G C T A G C A T A G C T A G T C C G A T G C A T G C A T C T G A C G T A C A G T G A C T C T A G G A T C A G C T A C G T T A C G A C G T

PH0043.1_Hmx3/Jaspar

Match Rank:6
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----ATAAAATGCTTRT
ATTNNTTAATTGCTTGT
 A C G T A C G T A C G T A C G T C G T A G C A T C G T A T C G A C G T A C G T A C G A T C T A G A T G C G C A T A C G T T C A G C G A T
G C T A G C A T A G C T A G T C C G A T G C A T G C A T C T G A C G T A C A G T G A C T C T A G G A T C A G C T A C G T T A C G A C G T

PH0075.1_Hoxd10/Jaspar

Match Rank:7
Score:0.62
Offset:-6
Orientation:forward strand
Alignment:------ATAAAATGCTTRT
AATGCAATAAAATTTAT--
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A G C A T C G T A T C G A C G T A C G T A C G A T C T A G A T G C G C A T A C G T T C A G C G A T
T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T A C G T A C G T

PH0108.1_Msx3/Jaspar

Match Rank:8
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--ATAAAATGCTTRT-
NNNTTAATTGGTTTTN
 A C G T A C G T C G T A G C A T C G T A T C G A C G T A C G T A C G A T C T A G A T G C G C A T A C G T T C A G C G A T A C G T
C G T A C G T A G T C A G A C T G A C T C G T A C G T A A C G T A G C T C T A G T A C G A C G T G A C T C A G T A G C T A C T G

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:9
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----ATAAAATGCTTRT
NCYAATAAAA-------
 A C G T A C G T A C G T A C G T C G T A G C A T C G T A T C G A C G T A C G T A C G A T C T A G A T G C G C A T A C G T T C A G C G A T
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:10
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---ATAAAATGCTTRT
GTCATAAAAN------
 A C G T A C G T A C G T C G T A G C A T C G T A T C G A C G T A C G T A C G A T C T A G A T G C G C A T A C G T T C A G C G A T
T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T A C G T A C G T A C G T A C G T A C G T A C G T