Information for 4-TGGCAGAGRAAACCAG (Motif 7)

C G A T C T A G A C T G T A G C G C T A T C A G G C T A C T A G C T A G C T G A C T G A G C T A T G A C G T A C C T G A A C T G
Reverse Opposite:
G T A C A G C T A C T G A C T G C G A T A G C T G A C T A G T C G A T C C A G T A G T C C A G T A T C G A G T C G A T C G C T A
p-value:1e-12
log p-value:-2.813e+01
Information Content per bp:1.675
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif2.14%
Number of Background Sequences with motif94.9
Percentage of Background Sequences with motif0.21%
Average Position of motif in Targets46.7 +/- 30.5bp
Average Position of motif in Background50.1 +/- 30.1bp
Strand Bias (log2 ratio + to - strand density)-1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SPIB/MA0081.1/Jaspar

Match Rank:1
Score:0.57
Offset:4
Orientation:forward strand
Alignment:TGGCAGAGRAAACCAG
----AGAGGAA-----
 C G A T C T A G A C T G T A G C G C T A T C A G G C T A C T A G C T A G C T G A C T G A G C T A T G A C G T A C C T G A A C T G
A C G T A C G T A C G T A C G T C G T A T A C G T G C A C T A G C A T G C G T A C G T A A C G T A C G T A C G T A C G T A C G T

STAT1::STAT2/MA0517.1/Jaspar

Match Rank:2
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:TGGCAGAGRAAACCAG
-GGAAANTGAAACTNA
 C G A T C T A G A C T G T A G C G C T A T C A G G C T A C T A G C T A G C T G A C T G A G C T A T G A C G T A C C T G A A C T G
A C G T T C A G C T A G C T G A C G T A T C G A T G C A G A C T C T A G T C G A C G T A C T G A A T G C G A C T C T A G G T C A

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:3
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:TGGCAGAGRAAACCAG
TGCCAAAATAAACANN
 C G A T C T A G A C T G T A G C G C T A T C A G G C T A C T A G C T A G C T G A C T G A G C T A T G A C G T A C C T G A A C T G
C G A T A C T G T A G C G T A C C G T A C T G A C T G A C T G A G A C T G T C A G T C A C T G A A G T C C G T A C T G A G C T A

IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer

Match Rank:4
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:TGGCAGAGRAAACCAG
--GAAAMTGAAACT--
 C G A T C T A G A C T G T A G C G C T A T C A G G C T A C T A G C T A G C T G A C T G A G C T A T G A C G T A C C T G A A C T G
A C G T A C G T C T A G T C G A C T G A G T C A T G A C A G C T T C A G T C G A C T G A C G T A A T G C G A C T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--TGGCAGAGRAAACCAG
CTTGGCAA----------
 A C G T A C G T C G A T C T A G A C T G T A G C G C T A T C A G G C T A C T A G C T A G C T G A C T G A G C T A T G A C G T A C C T G A A C T G
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:6
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--TGGCAGAGRAAACCAG
TAGGGCAAAGGTCA----
 A C G T A C G T C G A T C T A G A C T G T A G C G C T A T C A G G C T A C T A G C T A G C T G A C T G A G C T A T G A C G T A C C T G A A C T G
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:7
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-TGGCAGAGRAAACCAG
TTGGCA-----------
 A C G T C G A T C T A G A C T G T A G C G C T A T C A G G C T A C T A G C T A G C T G A C T G A G C T A T G A C G T A C C T G A A C T G
G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:8
Score:0.51
Offset:-3
Orientation:reverse strand
Alignment:---TGGCAGAGRAAACCAG
TNNGGGCAG----------
 A C G T A C G T A C G T C G A T C T A G A C T G T A G C G C T A T C A G G C T A C T A G C T A G C T G A C T G A G C T A T G A C G T A C C T G A A C T G
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

FOXA1/MA0148.3/Jaspar

Match Rank:9
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:TGGCAGAGRAAACCAG--
---CAAAGTAAACANNNN
 C G A T C T A G A C T G T A G C G C T A T C A G G C T A C T A G C T A G C T G A C T G A G C T A T G A C G T A C C T G A A C T G A C G T A C G T
A C G T A C G T A C G T G T A C G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C G C T A C G A T T A C G T C A G C T G A

NFIA/MA0670.1/Jaspar

Match Rank:10
Score:0.51
Offset:-3
Orientation:reverse strand
Alignment:---TGGCAGAGRAAACCAG
NNTTGGCANN---------
 A C G T A C G T A C G T C G A T C T A G A C T G T A G C G C T A T C A G G C T A C T A G C T A G C T G A C T G A G C T A T G A C G T A C C T G A A C T G
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T