Information for 7-CACCYTGGYWWCA (Motif 6)

A T G C C G T A A G T C A G T C A G C T A C G T A C T G A C T G A G T C C G A T C G T A G T A C C G T A
Reverse Opposite:
A C G T A C T G C G A T C G T A C T A G A G T C A G T C C G T A T C G A A C T G A C T G A C G T A T C G
p-value:1e-12
log p-value:-2.879e+01
Information Content per bp:1.871
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.83%
Number of Background Sequences with motif3.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets49.6 +/- 22.0bp
Average Position of motif in Background49.5 +/- 15.6bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx1/MA0509.1/Jaspar

Match Rank:1
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CACCYTGGYWWCA
GTTGCCATGGCAAC-
 A C G T A C G T A T G C C G T A A G T C A G T C A G C T A C G T A C T G A C T G A G T C C G A T C G T A G T A C C G T A
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C A C G T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.66
Offset:2
Orientation:forward strand
Alignment:CACCYTGGYWWCA-
--SCCTAGCAACAG
 A T G C C G T A A G T C A G T C A G C T A C G T A C T G A C T G A G T C C G A T C G T A G T A C C G T A A C G T
A C G T A C G T A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G

PB0159.1_Rfx4_2/Jaspar

Match Rank:3
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CACCYTGGYWWCA--
TACCCTAGTTACCGA
 A T G C C G T A A G T C A G T C A G C T A C G T A C T G A C T G A G T C C G A T C G T A G T A C C G T A A C G T A C G T
G C A T G T C A A T G C A T G C G T A C C A G T T C G A A C T G C G A T A C G T C G T A A G T C T A G C T A C G G T C A

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:4
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CACCYTGGYWWCA
TTGCCATGGCAACN
 A C G T A T G C C G T A A G T C A G T C A G C T A C G T A C T G A C T G A G T C C G A T C G T A G T A C C G T A
A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C

PB0055.1_Rfx4_1/Jaspar

Match Rank:5
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CACCYTGGYWWCA--
TACCATAGCAACGGT
 A T G C C G T A A G T C A G T C A G C T A C G T A C T G A C T G A G T C C G A T C G T A G T A C C G T A A C G T A C G T
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T

PB0158.1_Rfx3_2/Jaspar

Match Rank:6
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----CACCYTGGYWWCA------
ACTGACCCTTGGTTACCACAAAG
 A C G T A C G T A C G T A C G T A T G C C G T A A G T C A G T C A G C T A C G T A C T G A C T G A G T C C G A T C G T A G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T
T G C A A G T C A C G T A T C G G C T A A T G C T A C G A T G C G C A T C G A T T C A G A C T G C G A T C A G T C G T A G A T C T G A C T C G A T G A C T C G A T C G A C G T A A T C G

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:7
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CACCYTGGYWWCA
TTGCCATGGCAACC
 A C G T A T G C C G T A A G T C A G T C A G C T A C G T A C T G A C T G A G T C C G A T C G T A G T A C C G T A
A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C

NFIC/MA0161.1/Jaspar

Match Rank:8
Score:0.57
Offset:4
Orientation:forward strand
Alignment:CACCYTGGYWWCA
----TTGGCA---
 A T G C C G T A A G T C A G T C A G C T A C G T A C T G A C T G A G T C C G A T C G T A G T A C C G T A
A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T

PB0054.1_Rfx3_1/Jaspar

Match Rank:9
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----CACCYTGGYWWCA------
TGTGACCCTTAGCAACCGATTAA
 A C G T A C G T A C G T A C G T A T G C C G T A A G T C A G T C A G C T A C G T A C T G A C T G A G T C C G A T C G T A G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C A T G A G C T A T C G G T C A G A T C T G A C A T G C G A C T A G C T T C G A C T A G G A T C C T G A C G T A A G T C T A G C T C A G C G T A G C A T G C A T G C T A G C T A

RFX4/MA0799.1/Jaspar

Match Rank:10
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---CACCYTGGYWWCA
CGTTGCCATGGCAACG
 A C G T A C G T A C G T A T G C C G T A A G T C A G T C A G C T A C G T A C T G A C T G A G T C C G A T C G T A G T A C C G T A
A T G C C T A G G C A T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A T C G A G A T C T A C G