Information for 8-AATTGCCAAT (Motif 19)

C G T A C G T A A C G T C A G T C T A G A T G C A G T C G T C A G T C A G A C T
Reverse Opposite:
C T G A C A G T A C G T C T A G A T C G A G T C G T C A C G T A A C G T A C G T
p-value:1e-8
log p-value:-1.880e+01
Information Content per bp:1.845
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif1.78%
Number of Background Sequences with motif113.0
Percentage of Background Sequences with motif0.25%
Average Position of motif in Targets46.4 +/- 23.3bp
Average Position of motif in Background54.7 +/- 30.0bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0061.1_Hoxb6/Jaspar

Match Rank:1
Score:0.71
Offset:-5
Orientation:reverse strand
Alignment:-----AATTGCCAAT-
NNNGTAATTACNNATA
 A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C G T C A G T C T A G A T G C A G T C G T C A G T C A G A C T A C G T
T C G A G T C A A T C G C A T G A G C T G T C A C G T A C G A T C A G T C T G A T G A C T A G C G T C A G C T A C G A T C G T A

NFIA/MA0670.1/Jaspar

Match Rank:2
Score:0.71
Offset:1
Orientation:forward strand
Alignment:AATTGCCAAT-
-GGTGCCAAGT
 C G T A C G T A A C G T C A G T C T A G A T G C A G T C G T C A G T C A G A C T A C G T
A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

PH0024.1_Dlx5/Jaspar

Match Rank:3
Score:0.70
Offset:-7
Orientation:reverse strand
Alignment:-------AATTGCCAAT
NANNGNTAATTACCNN-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C G T C A G T C T A G A T G C A G T C G T C A G T C A G A C T
A T G C T C G A A C T G T G C A T C A G A T G C G A C T G T C A C G T A G A C T C A G T C T G A A G T C A G T C A T G C T A G C A C G T

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.69
Offset:3
Orientation:reverse strand
Alignment:AATTGCCAAT
---TGCCAA-
 C G T A C G T A A C G T C A G T C T A G A T G C A G T C G T C A G T C A G A C T
A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T

NFIX/MA0671.1/Jaspar

Match Rank:5
Score:0.69
Offset:1
Orientation:forward strand
Alignment:AATTGCCAAT
-CGTGCCAAG
 C G T A C G T A A C G T C A G T C T A G A T G C A G T C G T C A G T C A G A C T
A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

Myb/MA0100.2/Jaspar

Match Rank:6
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--AATTGCCAAT
CCAACTGCCA--
 A C G T A C G T C G T A C G T A A C G T C A G T C T A G A T G C A G T C G T C A G T C A G A C T
A G T C G A T C C G T A C T G A A G T C C G A T A C T G G A T C G T A C G C T A A C G T A C G T

Msx3/MA0709.1/Jaspar

Match Rank:7
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--AATTGCCAAT
NTAATTGN----
 A C G T A C G T C G T A C G T A A C G T C A G T C T A G A T G C A G T C G T C A G T C A G A C T
A G C T G C A T C T G A C G T A A C G T A G C T C T A G A T C G A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.67
Offset:2
Orientation:forward strand
Alignment:AATTGCCAAT
--TTGCCAAG
 C G T A C G T A A C G T C A G T C T A G A T G C A G T C G T C A G T C A G A C T
A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

Nobox/MA0125.1/Jaspar

Match Rank:9
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-AATTGCCAAT
TAATTGGT---
 A C G T C G T A C G T A A C G T C A G T C T A G A T G C A G T C G T C A G T C A G A C T
A G C T C G T A C G T A A C G T C A G T C T A G A T C G A G C T A C G T A C G T A C G T

MSX1/MA0666.1/Jaspar

Match Rank:10
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--AATTGCCAAT
NTAATTGG----
 A C G T A C G T C G T A C G T A A C G T C A G T C T A G A T G C A G T C G T C A G T C A G A C T
A G T C A C G T T G C A G T C A A C G T A C G T C T A G T A C G A C G T A C G T A C G T A C G T