Information for 13-AATTAGAAACAGG (Motif 15)

C G T A C G T A A C G T A C G T C G T A A C T G C T G A C G T A C T G A A T G C C G T A C T A G A C T G
Reverse Opposite:
A G T C A G T C A C G T A T C G A G C T A C G T G A C T A G T C C G A T C G T A C G T A A C G T A C G T
p-value:1e-9
log p-value:-2.225e+01
Information Content per bp:1.929
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.71%
Number of Background Sequences with motif4.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets35.8 +/- 21.2bp
Average Position of motif in Background58.7 +/- 29.1bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

VSX2/MA0726.1/Jaspar

Match Rank:1
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--AATTAGAAACAGG
NTAATTAG-------
 A C G T A C G T C G T A C G T A A C G T A C G T C G T A A C T G C T G A C G T A C T G A A T G C C G T A C T A G A C T G
T G A C G A C T C G T A C T G A A C G T C G A T C T G A T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

VSX1/MA0725.1/Jaspar

Match Rank:2
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--AATTAGAAACAGG
NTAATTAG-------
 A C G T A C G T C G T A C G T A A C G T A C G T C G T A A C T G C T G A C G T A C T G A A T G C C G T A C T A G A C T G
T G C A G A C T G T C A C T G A A G C T C A G T C T G A C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

EN1/MA0027.2/Jaspar

Match Rank:3
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--AATTAGAAACAGG
CTAATTAG-------
 A C G T A C G T C G T A C G T A A C G T A C G T C G T A A C T G C T G A C G T A C T G A A T G C C G T A C T A G A C T G
A T G C G A C T T G C A G T C A A C G T A G C T C G T A T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PAX4/MA0068.2/Jaspar

Match Rank:4
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--AATTAGAAACAGG
CTAATTAG-------
 A C G T A C G T C G T A C G T A A C G T A C G T C G T A A C T G C T G A C G T A C T G A A T G C C G T A C T A G A C T G
A G T C C A G T G C T A C G T A A C G T G C A T G T C A T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Shox2/MA0720.1/Jaspar

Match Rank:5
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--AATTAGAAACAGG
CTAATTAA-------
 A C G T A C G T C G T A C G T A A C G T A C G T C G T A A C T G C T G A C G T A C T G A A T G C C G T A C T A G A C T G
A G T C G A C T G C T A G T C A G C A T C A G T G C T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:6
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-AATTAGAAACAGG
TAATTAGN------
 A C G T C G T A C G T A A C G T A C G T C G T A A C T G C T G A C G T A C T G A A T G C C G T A C T A G A C T G
A G C T G T C A C G T A A C G T A C G T C T G A T C A G A T G C A C G T A C G T A C G T A C G T A C G T A C G T

MIXL1/MA0662.1/Jaspar

Match Rank:7
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---AATTAGAAACAGG
TCTAATTAAC------
 A C G T A C G T A C G T C G T A C G T A A C G T A C G T C G T A A C T G C T G A C G T A C T G A A T G C C G T A C T A G A C T G
C G A T A G T C G A C T T C G A G C T A A G C T A G C T G C T A T C G A T G A C A C G T A C G T A C G T A C G T A C G T A C G T

ISX/MA0654.1/Jaspar

Match Rank:8
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--AATTAGAAACAGG
CTAATTAA-------
 A C G T A C G T C G T A C G T A A C G T A C G T C G T A A C T G C T G A C G T A C T G A A T G C C G T A C T A G A C T G
A G T C G A C T G T C A G T C A A C G T A C G T C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0148.1_Mtf1_2/Jaspar

Match Rank:9
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-AATTAGAAACAGG
AAATAAGAAAAAAC
 A C G T C G T A C G T A A C G T A C G T C G T A A C T G C T G A C G T A C T G A A T G C C G T A C T A G A C T G
G C T A C G T A G C T A C A G T G C T A G C T A C A T G G T C A G C T A G C T A G C T A T G C A C G T A T G A C

SHOX/MA0630.1/Jaspar

Match Rank:10
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--AATTAGAAACAGG
NCAATTAN-------
 A C G T A C G T C G T A C G T A A C G T A C G T C G T A A C T G C T G A C G T A C T G A A T G C C G T A C T A G A C T G
A G T C G A T C G C T A G T C A A G C T A G C T C G T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T