Information for 9-AGGGCCAACAAAT (Motif 11)

C G T A A T C G C T A G A C T G A G T C A G T C C G T A C G T A A G T C C G T A C G T A C G T A A C G T
Reverse Opposite:
C G T A A C G T A C G T A C G T C T A G C G A T A C G T A C T G A C T G A G T C A G T C A T G C C G A T
p-value:1e-10
log p-value:-2.473e+01
Information Content per bp:1.928
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.59%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets42.0 +/- 26.2bp
Average Position of motif in Background37.3 +/- 14.5bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0056.1_Hoxa9/Jaspar

Match Rank:1
Score:0.64
Offset:0
Orientation:forward strand
Alignment:AGGGCCAACAAAT----
ACGGCCATAAAATTAAT
 C G T A A T C G C T A G A C T G A G T C A G T C C G T A C G T A A G T C C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T
C T G A T G A C C T A G A T C G G A T C G T A C C T G A C G A T G C T A C G T A C G T A C G T A G C A T C A G T C G T A C T G A C G A T

PH0064.1_Hoxb9/Jaspar

Match Rank:2
Score:0.62
Offset:0
Orientation:forward strand
Alignment:AGGGCCAACAAAT---
AGAGCCATAAAATTCG
 C G T A A T C G C T A G A C T G A G T C A G T C C G T A C G T A A G T C C G T A C G T A C G T A A C G T A C G T A C G T A C G T
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G

HOXB13/MA0901.1/Jaspar

Match Rank:3
Score:0.59
Offset:4
Orientation:forward strand
Alignment:AGGGCCAACAAAT-
----CCAATAAAAC
 C G T A A T C G C T A G A C T G A G T C A G T C C G T A C G T A A G T C C G T A C G T A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C

PH0013.1_Cdx2/Jaspar

Match Rank:4
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-AGGGCCAACAAAT--
AAAGGTAATAAAATTT
 A C G T C G T A A T C G C T A G A C T G A G T C A G T C C G T A C G T A A G T C C G T A C G T A C G T A A C G T A C G T A C G T
C G T A T C G A T A C G C T A G T C A G A G C T G T C A C T G A C G A T C G T A C G T A G C T A G C T A G A C T C A G T G A C T

NFIX/MA0671.1/Jaspar

Match Rank:5
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AGGGCCAACAAAT
CGTGCCAAG----
 C G T A A T C G C T A G A C T G A G T C A G T C C G T A C G T A A G T C C G T A C G T A C G T A A C G T
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T

HOXA13/MA0650.1/Jaspar

Match Rank:6
Score:0.58
Offset:4
Orientation:forward strand
Alignment:AGGGCCAACAAAT-
----CCAATAAAAA
 C G T A A T C G C T A G A C T G A G T C A G T C C G T A C G T A A G T C C G T A C G T A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A

NFIC/MA0161.1/Jaspar

Match Rank:7
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:AGGGCCAACAAAT
--TGCCAA-----
 C G T A A T C G C T A G A C T G A G T C A G T C C G T A C G T A A G T C C G T A C G T A C G T A A C G T
A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T

PH0012.1_Cdx1/Jaspar

Match Rank:8
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-AGGGCCAACAAAT--
TAAGGTAATAAAATTA
 A C G T C G T A A T C G C T A G A C T G A G T C A G T C C G T A C G T A A G T C C G T A C G T A C G T A A C G T A C G T A C G T
C G A T C T G A T G C A C T A G T C A G G A C T G T C A C T G A C G A T G C T A C G T A G C T A G C T A A G C T C A G T G C T A

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.57
Offset:2
Orientation:forward strand
Alignment:AGGGCCAACAAAT
--GGCCATTAAC-
 C G T A A T C G C T A G A C T G A G T C A G T C C G T A C G T A A G T C C G T A C G T A C G T A A C G T
A C G T A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C A C G T

MF0011.1_HMG_class/Jaspar

Match Rank:10
Score:0.56
Offset:6
Orientation:reverse strand
Alignment:AGGGCCAACAAAT
------AACAAT-
 C G T A A T C G C T A G A C T G A G T C A G T C C G T A C G T A A G T C C G T A C G T A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A C G T A G A T C C T G A T G C A C G A T A C G T