Information for 6-CCCATTAGGC (Motif 5)

T A G C A G T C A G T C C G T A A C G T A C G T C G T A A T C G A T C G A G T C
Reverse Opposite:
C T A G A T G C A T G C A C G T C G T A G T C A A C G T A C T G C T A G A C T G
p-value:1e-12
log p-value:-2.961e+01
Information Content per bp:1.863
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.51%
Number of Background Sequences with motif28.6
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets46.8 +/- 21.4bp
Average Position of motif in Background54.5 +/- 33.0bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:1
Score:0.77
Offset:0
Orientation:reverse strand
Alignment:CCCATTAGGC
BCMATTAG--
 T A G C A G T C A G T C C G T A A C G T A C G T C G T A A T C G A T C G A G T C
A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G A C G T A C G T

BARX1/MA0875.1/Jaspar

Match Rank:2
Score:0.76
Offset:0
Orientation:forward strand
Alignment:CCCATTAGGC
GCAATTAG--
 T A G C A G T C A G T C C G T A A C G T A C G T C G T A A T C G A T C G A G T C
T C A G G A T C T G C A T G C A A C G T A C G T C G T A T C A G A C G T A C G T

BSX/MA0876.1/Jaspar

Match Rank:3
Score:0.75
Offset:0
Orientation:forward strand
Alignment:CCCATTAGGC
CCAATTAA--
 T A G C A G T C A G T C C G T A A C G T A C G T C G T A A T C G A T C G A G T C
T A G C G A T C T G C A T C G A A C G T C G A T C G T A T C G A A C G T A C G T

VENTX/MA0724.1/Jaspar

Match Rank:4
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-CCCATTAGGC
ACCGATTAG--
 A C G T T A G C A G T C A G T C C G T A A C G T A C G T C G T A A T C G A T C G A G T C
C G T A T G A C G A T C T C A G G T C A A C G T A C G T C G T A C T A G A C G T A C G T

HOXB3/MA0903.1/Jaspar

Match Rank:5
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-CCCATTAGGC
ACTAATTAGC-
 A C G T T A G C A G T C A G T C C G T A A C G T A C G T C G T A A T C G A T C G A G T C
C T G A T A G C G A C T T G C A T C G A A G C T G A C T G C T A T C A G T G A C A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-CCCATTAGGC
GGCCATTAAC-
 A C G T T A G C A G T C A G T C C G T A A C G T A C G T C G T A A T C G A T C G A G T C
C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C A C G T

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:7
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:CCCATTAGGC
-YCATTAMC-
 T A G C A G T C A G T C C G T A A C G T A C G T C G T A A T C G A T C G A G T C
A C G T A G C T T G A C C G T A A C G T A C G T C G T A G T C A T G A C A C G T

EN2/MA0642.1/Jaspar

Match Rank:8
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-CCCATTAGGC
CCCAATTAGC-
 A C G T T A G C A G T C A G T C C G T A A C G T A C G T C G T A A T C G A T C G A G T C
T A G C A T G C A G T C T G C A T G C A A C G T A G C T C T G A T A C G A T G C A C G T

Barhl1/MA0877.1/Jaspar

Match Rank:9
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-CCCATTAGGC
NNCAATTANN-
 A C G T T A G C A G T C A G T C C G T A A C G T A C G T C G T A A T C G A T C G A G T C
T C G A T A C G G A T C T C G A G C T A G A C T G C A T C G T A C T A G T A G C A C G T

PDX1/MA0132.2/Jaspar

Match Rank:10
Score:0.70
Offset:0
Orientation:forward strand
Alignment:CCCATTAGGC
GTAATTAG--
 T A G C A G T C A G T C C G T A A C G T A C G T C G T A A T C G A T C G A G T C
T A C G G A C T T G C A G T C A A C G T A C G T C G T A T C A G A C G T A C G T