Information for 3-CCACTAGGTGGCA (Motif 3)

T G A C A G T C C G T A A T G C A G C T T G C A C T A G T A C G C A G T T A C G C A T G G T A C C T G A
Reverse Opposite:
G A C T A C T G G A T C A T G C G T C A A T G C A G T C A C G T T C G A T A C G G C A T A C T G A C T G
p-value:1e-16
log p-value:-3.788e+01
Information Content per bp:1.655
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif2.02%
Number of Background Sequences with motif40.6
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets52.6 +/- 26.1bp
Average Position of motif in Background47.0 +/- 28.2bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:1
Score:0.86
Offset:-3
Orientation:reverse strand
Alignment:---CCACTAGGTGGCA----
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T T G A C A G T C C G T A A T G C A G C T T G C A C T A G T A C G C A G T T A C G C A T G G T A C C T G A A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.82
Offset:-3
Orientation:forward strand
Alignment:---CCACTAGGTGGCA---
TGGCCACCAGGGGGCGCTA
 A C G T A C G T A C G T T G A C A G T C C G T A A T G C A G C T T G C A C T A G T A C G C A G T T A C G C A T G G T A C C T G A A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.79
Offset:-1
Orientation:reverse strand
Alignment:-CCACTAGGTGGCA------
GCCASCAGGGGGCGCYVNNG
 A C G T T G A C A G T C C G T A A T G C A G C T T G C A C T A G T A C G C A G T T A C G C A T G G T A C C T G A A C G T A C G T A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

Hic1/MA0739.1/Jaspar

Match Rank:4
Score:0.67
Offset:5
Orientation:reverse strand
Alignment:CCACTAGGTGGCA-
-----GGTTGGCAT
 T G A C A G T C C G T A A T G C A G C T T G C A C T A G T A C G C A G T T A C G C A T G G T A C C T G A A C G T
A C G T A C G T A C G T A C G T A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:5
Score:0.64
Offset:5
Orientation:forward strand
Alignment:CCACTAGGTGGCA
-----AGGTGTCA
 T G A C A G T C C G T A A T G C A G C T T G C A C T A G T A C G C A G T T A C G C A T G G T A C C T G A
A C G T A C G T A C G T A C G T A C G T C T G A C T A G A T C G A G C T A C T G G A C T A G T C C T G A

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:6
Score:0.62
Offset:5
Orientation:reverse strand
Alignment:CCACTAGGTGGCA
-----ARNTGACA
 T G A C A G T C C G T A A T G C A G C T T G C A C T A G T A C G C A G T T A C G C A T G G T A C C T G A
A C G T A C G T A C G T A C G T A C G T T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A

PB0029.1_Hic1_1/Jaspar

Match Rank:7
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CCACTAGGTGGCA----
-NGTAGGTTGGCATNNN
 T G A C A G T C C G T A A T G C A G C T T G C A C T A G T A C G C A G T T A C G C A T G G T A C C T G A A C G T A C G T A C G T A C G T
A C G T C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

PH0164.1_Six4/Jaspar

Match Rank:8
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CCACTAGGTGGCA-----
-TNNNNGGTGTCATNTNT
 T G A C A G T C C G T A A T G C A G C T T G C A C T A G T A C G C A G T T A C G C A T G G T A C C T G A A C G T A C G T A C G T A C G T A C G T
A C G T A G C T T C A G T C G A C A G T C T G A T C A G A C T G A C G T C T A G A C G T G T A C C T G A C G A T C A G T G A C T G T C A C A G T

PH0170.1_Tgif2/Jaspar

Match Rank:9
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CCACTAGGTGGCA----
-AACTAGCTGTCAATAC
 T G A C A G T C C G T A A T G C A G C T T G C A C T A G T A C G C A G T T A C G C A T G G T A C C T G A A C G T A C G T A C G T A C G T
A C G T G C T A C G T A A T G C A G C T C T G A A T C G G T A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T T G C A T A G C

HIC2/MA0738.1/Jaspar

Match Rank:10
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:CCACTAGGTGGCA-
-----NGTGGGCAT
 T G A C A G T C C G T A A T G C A G C T T G C A C T A G T A C G C A G T T A C G C A T G G T A C C T G A A C G T
A C G T A C G T A C G T A C G T A C G T T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T