Information for 9-GCTTKTTAAATGA (Motif 7)

C T A G G T A C A G C T C G A T A C G T A C G T A C G T G T C A C G T A G T C A C G A T A C T G C G T A
Reverse Opposite:
C G A T G T A C C G T A C A G T A C G T C A G T C G T A G T C A G T C A C G T A C T G A A C T G A G T C
p-value:1e-11
log p-value:-2.754e+01
Information Content per bp:1.825
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.67%
Number of Background Sequences with motif1.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets42.2 +/- 29.6bp
Average Position of motif in Background64.4 +/- 23.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0005.1_Bbx_1/Jaspar

Match Rank:1
Score:0.62
Offset:2
Orientation:forward strand
Alignment:GCTTKTTAAATGA----
--TAATTCAATGAAGTG
 C T A G G T A C A G C T C G A T A C G T A C G T A C G T G T C A C G T A G T C A C G A T A C T G C G T A A C G T A C G T A C G T A C G T
A C G T A C G T G C A T G C T A C T G A C G A T C G A T T G A C G C T A C G T A C G A T A C T G C G T A G C T A A T C G G C A T C T A G

PH0168.1_Hnf1b/Jaspar

Match Rank:2
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---GCTTKTTAAATGA-
ANNNCTAGTTAACNGNN
 A C G T A C G T A C G T C T A G G T A C A G C T C G A T A C G T A C G T A C G T G T C A C G T A G T C A C G A T A C T G C G T A A C G T
C T G A T A G C C T A G T C A G A G T C G C A T T C G A C T A G C A G T C G A T C G T A C G T A A G T C T G C A C T A G T G A C G C A T

Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer

Match Rank:3
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GCTTKTTAAATGA
-CNTGTTTACATA
 C T A G G T A C A G C T C G A T A C G T A C G T A C G T G T C A C G T A G T C A C G A T A C T G C G T A
A C G T A T G C G A C T A C G T C T A G A C G T A C G T A C G T C T G A G A T C G C T A A G C T C G T A

PH0153.1_Prop1/Jaspar

Match Rank:4
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GCTTKTTAAATGA----
GNNTNTTAATTAATNCN
 C T A G G T A C A G C T C G A T A C G T A C G T A C G T G T C A C G T A G T C A C G A T A C T G C G T A A C G T A C G T A C G T A C G T
C T A G G A C T G C A T G C A T G T A C G A C T G A C T C G T A C G T A G A C T A C G T C T G A C T G A A G C T A C G T A G T C A C T G

PH0100.1_Lmx1a/Jaspar

Match Rank:5
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GCTTKTTAAATGA----
NNTTTTTAATTAATTCG
 C T A G G T A C A G C T C G A T A C G T A C G T A C G T G T C A C G T A G T C A C G A T A C T G C G T A A C G T A C G T A C G T A C G T
C T A G C T A G C G A T C G A T G C A T G A C T G A C T C G T A C G T A C G A T C G A T C T G A C T G A C G A T C G A T A T G C A T C G

PB0093.1_Zfp105_1/Jaspar

Match Rank:6
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GCTTKTTAAATGA-
NTNTTGTTGTTTGTN
 A C G T C T A G G T A C A G C T C G A T A C G T A C G T A C G T G T C A C G T A G T C A C G A T A C T G C G T A A C G T
G A T C C G A T G T A C C G A T G A C T C A T G G C A T A G C T C T A G C G A T C G A T C A G T C T A G G A C T C G A T

LBX1/MA0618.1/Jaspar

Match Rank:7
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GCTTKTTAAATGA
-CTAATTAA----
 C T A G G T A C A G C T C G A T A C G T A C G T A C G T G T C A C G T A G T C A C G A T A C T G C G T A
A C G T T A G C A G C T G C T A C T G A A C G T A C G T C T G A G C T A A C G T A C G T A C G T A C G T

PH0091.1_Lhx1/Jaspar

Match Rank:8
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GCTTKTTAAATGA----
NNTTATTAATTAATNCN
 C T A G G T A C A G C T C G A T A C G T A C G T A C G T G T C A C G T A G T C A C G A T A C T G C G T A A C G T A C G T A C G T A C G T
T G A C C T G A C G A T C G A T C G T A G A C T G A C T T C G A C G T A C G A T A C G T C T G A C T G A G A C T G C A T A G T C A C T G

PH0101.1_Lmx1b/Jaspar

Match Rank:9
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GCTTKTTAAATGA----
AGTTTTTAATTAATTTG
 C T A G G T A C A G C T C G A T A C G T A C G T A C G T G T C A C G T A G T C A C G A T A C T G C G T A A C G T A C G T A C G T A C G T
T C G A C T A G C G A T C G A T G C A T A G C T G A C T G C T A C G T A G C A T C G A T C G T A C T G A C G A T C G A T G A C T A C T G

PH0128.1_Otp/Jaspar

Match Rank:10
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GCTTKTTAAATGA-----
-CNNATTAATTAATTNNN
 C T A G G T A C A G C T C G A T A C G T A C G T A C G T G T C A C G T A G T C A C G A T A C T G C G T A A C G T A C G T A C G T A C G T A C G T
A C G T G T A C G T A C G T C A T C G A G A C T G A C T T C G A C T G A A G C T A C G T C T G A C T G A A G C T C G A T C T G A A G T C A C T G