Information for 4-GTCTTGTCCCTTGTCA (Motif 4)

C A T G A G C T T A G C A C G T A G C T A T C G A G C T A G T C G A T C A G T C A G C T C G A T C A T G A G C T G T A C C T G A
Reverse Opposite:
A G C T A C T G C T G A G T A C C G T A T C G A C T A G C A T G T C A G C T G A T A G C T C G A T C G A A T C G C T G A G A T C
p-value:1e-12
log p-value:-2.796e+01
Information Content per bp:1.668
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.56%
Number of Background Sequences with motif28.1
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets52.9 +/- 21.1bp
Average Position of motif in Background49.0 +/- 27.3bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PKNOX2/MA0783.1/Jaspar

Match Rank:1
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:GTCTTGTCCCTTGTCA
----TGACACCTGTCA
 C A T G A G C T T A G C A C G T A G C T A T C G A G C T A G T C G A T C A G T C A G C T C G A T C A T G A G C T G T A C C T G A
A C G T A C G T A C G T A C G T G A C T A C T G C T G A A G T C C T G A A T G C G T A C G C A T C T A G G A C T A T G C G C T A

PB0128.1_Gcm1_2/Jaspar

Match Rank:2
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:GTCTTGTCCCTTGTCA---
--NTCNTCCCCTATNNGNN
 C A T G A G C T T A G C A C G T A G C T A T C G A G C T A G T C G A T C A G T C A G C T C G A T C A T G A G C T G T A C C T G A A C G T A C G T A C G T
A C G T A C G T T G A C C A G T A G T C T A G C A G C T A G T C T A G C G T A C G T A C A G C T C T G A A G C T C A T G A T G C T A C G G T A C G C T A

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:3
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:GTCTTGTCCCTTGTCA
---CTGTTCCTGG---
 C A T G A G C T T A G C A C G T A G C T A T C G A G C T A G T C G A T C A G T C A G C T C G A T C A T G A G C T G T A C C T G A
A C G T A C G T A C G T T A G C C G A T A T C G A C G T A C G T A G T C A G T C G C A T C A T G A T C G A C G T A C G T A C G T

PKNOX1/MA0782.1/Jaspar

Match Rank:4
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:GTCTTGTCCCTTGTCA
----TGACACCTGTCA
 C A T G A G C T T A G C A C G T A G C T A T C G A G C T A G T C G A T C A G T C A G C T C G A T C A T G A G C T G T A C C T G A
A C G T A C G T A C G T A C G T G C A T A T C G C G T A A G T C T C G A A T G C G T A C G A C T C A T G G A C T A T G C C T G A

TGIF2/MA0797.1/Jaspar

Match Rank:5
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:GTCTTGTCCCTTGTCA
----TGACAGCTGTCA
 C A T G A G C T T A G C A C G T A G C T A T C G A G C T A G T C G A T C A G T C A G C T C G A T C A T G A G C T G T A C C T G A
A C G T A C G T A C G T A C G T G C A T T A C G C T G A G A T C C T G A A T C G G T A C G A C T C T A G G A C T G A T C C G T A

Sox2/MA0143.3/Jaspar

Match Rank:6
Score:0.52
Offset:7
Orientation:forward strand
Alignment:GTCTTGTCCCTTGTCA
-------CCTTTGTT-
 C A T G A G C T T A G C A C G T A G C T A T C G A G C T A G T C G A T C A G T C A G C T C G A T C A T G A G C T G T A C C T G A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T

INSM1/MA0155.1/Jaspar

Match Rank:7
Score:0.51
Offset:4
Orientation:reverse strand
Alignment:GTCTTGTCCCTTGTCA
----CGCCCCCTGACA
 C A T G A G C T T A G C A C G T A G C T A T C G A G C T A G T C G A T C A G T C A G C T C G A T C A T G A G C T G T A C C T G A
A C G T A C G T A C G T A C G T G A T C C T A G T G A C A G T C A G T C A T G C A G T C C G A T C A T G T C G A G T A C G T C A

MEIS1/MA0498.2/Jaspar

Match Rank:8
Score:0.51
Offset:10
Orientation:reverse strand
Alignment:GTCTTGTCCCTTGTCA-
----------NTGTCAN
 C A T G A G C T T A G C A C G T A G C T A T C G A G C T A G T C G A T C A G T C A G C T C G A T C A T G A G C T G T A C C T G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A T C G A C T C T A G A C G T A T G C C G T A C G T A

MEIS3/MA0775.1/Jaspar

Match Rank:9
Score:0.51
Offset:9
Orientation:reverse strand
Alignment:GTCTTGTCCCTTGTCA-
---------CCTGTCAA
 C A T G A G C T T A G C A C G T A G C T A T C G A G C T A G T C G A T C A G T C A G C T C G A T C A T G A G C T G T A C C T G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:10
Score:0.51
Offset:7
Orientation:forward strand
Alignment:GTCTTGTCCCTTGTCA
-------CCWTTGTY-
 C A T G A G C T T A G C A C G T A G C T A T C G A G C T A G T C G A T C A G T C A G C T C G A T C A T G A G C T G T A C C T G A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T