Information for 3-TGCTGCTGTGCWTCCC (Motif 3)

C A G T A C T G A G T C G C A T A C T G T A G C A G C T A C T G G A C T A C T G A G T C C G A T A C G T A T G C A G T C G T A C
Reverse Opposite:
A C T G C T A G A T C G T C G A G C T A C T A G A G T C C G T A A G T C C T G A A C T G A G T C C G T A T A C G A G T C G T C A
p-value:1e-12
log p-value:-2.805e+01
Information Content per bp:1.729
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.13%
Number of Background Sequences with motif9.0
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets59.6 +/- 26.5bp
Average Position of motif in Background39.2 +/- 14.5bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0207.1_Zic3_2/Jaspar

Match Rank:1
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--TGCTGCTGTGCWTCCC
NNTCCTGCTGTGNNN---
 A C G T A C G T C A G T A C T G A G T C G C A T A C T G T A G C A G C T A C T G G A C T A C T G A G T C C G A T A C G T A T G C A G T C G T A C
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:2
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--TGCTGCTGTGCWTCCC
TNTCCTGCTGTGNNG---
 A C G T A C G T C A G T A C T G A G T C G C A T A C T G T A G C A G C T A C T G G A C T A C T G A G T C C G A T A C G T A T G C A G T C G T A C
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G A C G T A C G T A C G T

NHLH1/MA0048.2/Jaspar

Match Rank:3
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:TGCTGCTGTGCWTCCC
CGCAGCTGCG------
 C A G T A C T G A G T C G C A T A C T G T A G C A G C T A C T G G A C T A C T G A G T C C G A T A C G T A T G C A G T C G T A C
T G A C C T A G A T G C T C G A A T C G T A G C A C G T A C T G A G T C A C T G A C G T A C G T A C G T A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--TGCTGCTGTGCWTCCC
CCCCCTGCTGTG------
 A C G T A C G T C A G T A C T G A G T C G C A T A C T G T A G C A G C T A C T G G A C T A C T G A G T C C G A T A C G T A T G C A G T C G T A C
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T A C G T A C G T A C G T

E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer

Match Rank:5
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:TGCTGCTGTGCWTCCC
-GCAGCTGTNN-----
 C A G T A C T G A G T C G C A T A C T G T A G C A G C T A C T G G A C T A C T G A G T C C G A T A C G T A T G C A G T C G T A C
A C G T T C A G A G T C C G T A A T C G T A G C A C G T A C T G A G C T A C T G G C A T A C G T A C G T A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:6
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--TGCTGCTGTGCWTCCC
TCNCCTGCTGNGNNN---
 A C G T A C G T C A G T A C T G A G T C G C A T A C T G T A G C A G C T A C T G G A C T A C T G A G T C C G A T A C G T A T G C A G T C G T A C
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G A C G T A C G T A C G T

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-TGCTGCTGTGCWTCCC
CAGCAGCTGN-------
 A C G T C A G T A C T G A G T C G C A T A C T G T A G C A G C T A C T G G A C T A C T G A G T C C G A T A C G T A T G C A G T C G T A C
T G A C T C G A T C A G A G T C C G T A A T C G A T G C A C G T A C T G A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:8
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----TGCTGCTGTGCWTCCC
GGCCYCCTGCTGDGH-----
 A C G T A C G T A C G T A C G T C A G T A C T G A G T C G C A T A C T G T A G C A G C T A C T G G A C T A C T G A G T C C G A T A C G T A T G C A G T C G T A C
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T A C G T A C G T A C G T A C G T

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:9
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--TGCTGCTGTGCWTCCC
NNAGCAGCTGCT------
 A C G T A C G T C A G T A C T G A G T C G C A T A C T G T A G C A G C T A C T G G A C T A C T G A G T C C G A T A C G T A T G C A G T C G T A C
T C A G T A G C C T G A T C A G A G T C C G T A A T C G A T G C C G A T A C T G A G T C G A C T A C G T A C G T A C G T A C G T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:10
Score:0.58
Offset:4
Orientation:forward strand
Alignment:TGCTGCTGTGCWTCCC
----GCTGTG------
 C A G T A C T G A G T C G C A T A C T G T A G C A G C T A C T G G A C T A C T G A G T C C G A T A C G T A T G C A G T C G T A C
A C G T A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T A C G T A C G T A C G T