Information for 3-GTCTTTAGGA (Motif 29)

A C T G A G C T A G T C A G C T A C G T A C G T C G T A A C T G A C T G C G T A
Reverse Opposite:
A C G T A G T C A G T C A C G T C G T A C G T A C T G A A C T G C T G A A G T C
p-value:1e-6
log p-value:-1.603e+01
Information Content per bp:1.946
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.99%
Number of Background Sequences with motif25.9
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets35.1 +/- 25.1bp
Average Position of motif in Background48.5 +/- 30.1bp
Strand Bias (log2 ratio + to - strand density)-1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXD11/MA0908.1/Jaspar

Match Rank:1
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GTCTTTAGGA-
-NTTTTACGAC
 A C T G A G C T A G T C A G C T A C G T A C G T C G T A A C T G A C T G C G T A A C G T
A C G T C G A T C G A T C G A T C G A T C G A T C G T A A G T C C T A G C G T A A G T C

HOXC10/MA0905.1/Jaspar

Match Rank:2
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GTCTTTAGGA-
-NTTTTACGAC
 A C T G A G C T A G T C A G C T A C G T A C G T C G T A A C T G A C T G C G T A A C G T
A C G T C G T A C G A T G C A T G C A T C G A T C G T A G A T C C A T G C T G A A G T C

PH0065.1_Hoxc10/Jaspar

Match Rank:3
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GTCTTTAGGA-----
ANNTTTTACGACNTNN
 A C G T A C T G A G C T A G T C A G C T A C G T A C G T C G T A A C T G A C T G C G T A A C G T A C G T A C G T A C G T A C G T
T G C A T A G C C T A G G C A T C A G T C G A T C G A T C G T A A G T C A C T G C T G A A G T C G A C T G C A T G C A T C G T A

HOXD12/MA0873.1/Jaspar

Match Rank:4
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GTCTTTAGGA--
-NTTTTACGACT
 A C T G A G C T A G T C A G C T A C G T A C G T C G T A A C T G A C T G C G T A A C G T A C G T
A C G T C A G T C G A T G C A T A G C T G C A T C T G A A G T C A T C G T C G A A G T C A G C T

HOXC11/MA0651.1/Jaspar

Match Rank:5
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GTCTTTAGGA--
-NTTTTACGACC
 A C T G A G C T A G T C A G C T A C G T A C G T C G T A A C T G A C T G C G T A A C G T A C G T
A C G T C G T A C G A T C A G T C G A T G C A T C G T A A G T C C T A G C T G A A G T C G A T C

HOXC12/MA0906.1/Jaspar

Match Rank:6
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GTCTTTAGGA--
-NTTTTACGACC
 A C T G A G C T A G T C A G C T A C G T A C G T C G T A A C T G A C T G C G T A A C G T A C G T
A C G T C G A T C A G T C G A T G C A T C G A T T C G A A G T C C A T G C T G A A G T C G A T C

PH0077.1_Hoxd12/Jaspar

Match Rank:7
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--GTCTTTAGGA-----
NNNATTTTACGACNNTN
 A C G T A C G T A C T G A G C T A G T C A G C T A C G T A C G T C G T A A C T G A C T G C G T A A C G T A C G T A C G T A C G T A C G T
G T C A C G T A C T A G C T G A C G A T C G A T C G A T C G A T C G T A A G T C C A T G C T G A A G T C A G T C G A C T C G A T C T A G

PH0076.1_Hoxd11/Jaspar

Match Rank:8
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--GTCTTTAGGA-----
ANNATTTTACGACNTNA
 A C G T A C G T A C T G A G C T A G T C A G C T A C G T A C G T C G T A A C T G A C T G C G T A A C G T A C G T A C G T A C G T A C G T
G T C A C T A G C T A G C G T A C G A T C A G T C G A T C G A T C G T A A G T C C A T G C T G A A G T C A G T C G A C T C G A T C T G A

HOXC13/MA0907.1/Jaspar

Match Rank:9
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GTCTTTAGGA--
-NTTTTACGAGN
 A C T G A G C T A G T C A G C T A C G T A C G T C G T A A C T G A C T G C G T A A C G T A C G T
A C G T C G A T C G A T C G A T C G A T G C A T G T C A A G T C C T A G T C G A A T C G T G A C

PH0068.1_Hoxc13/Jaspar

Match Rank:10
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GTCTTTAGGA-----
NAATTTTACGAGNTNN
 A C G T A C T G A G C T A G T C A G C T A C G T A C G T C G T A A C T G A C T G C G T A A C G T A C G T A C G T A C G T A C G T
G C T A C T G A C G T A C G A T C G A T C G A T C G A T C T G A G A T C C T A G C T G A A T C G T G A C C G A T C G A T C G A T