Information for 2-GGTTACCTAG (Motif 27)

C T A G C T A G G C A T A C G T C T G A A G T C A G T C A C G T C G T A A C T G
Reverse Opposite:
A G T C C G A T C G T A A C T G A C T G A G C T G T C A C G T A A G T C A G T C
p-value:1e-7
log p-value:-1.773e+01
Information Content per bp:1.834
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.27%
Number of Background Sequences with motif43.6
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets33.0 +/- 22.3bp
Average Position of motif in Background54.6 +/- 21.5bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0168.1_Hnf1b/Jaspar

Match Rank:1
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---GGTTACCTAG----
AGCTGTTAACTAGCCGT
 A C G T A C G T A C G T C T A G C T A G G C A T A C G T C T G A A G T C A G T C A C G T C G T A A C T G A C G T A C G T A C G T A C G T
C G T A A C T G A G T C A C G T C T A G G C A T G A C T C G T A G C T A A G T C A G C T C G T A T C A G A G T C G A T C A T C G A G C T

PH0040.1_Hmbox1/Jaspar

Match Rank:2
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--GGTTACCTAG-----
GANGTTAACTAGTTTNN
 A C G T A C G T C T A G C T A G G C A T A C G T C T G A A G T C A G T C A C G T C G T A A C T G A C G T A C G T A C G T A C G T A C G T
T A C G G C T A G C A T T C A G G C A T G C A T C G T A G T C A A G T C A G C T G T C A T C A G G C A T G A C T G A C T C G A T A G T C

HMBOX1/MA0895.1/Jaspar

Match Rank:3
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GGTTACCTAG-
-GTTAACTAGN
 C T A G C T A G G C A T A C G T C T G A A G T C A G T C A C G T C G T A A C T G A C G T
A C G T A T C G C A G T G C A T C G T A G C T A T A G C G A C T G C T A T C A G A C G T

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:4
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GGTTACCTAG-----
TGTTKCCTAGCAACM
 C T A G C T A G G C A T A C G T C T G A A G T C A G T C A C G T C G T A A C T G A C G T A C G T A C G T A C G T A C G T
C A G T T C A G A G C T G A C T A C G T A G T C G A T C G A C T C T G A A C T G G A T C C G T A C T G A A G T C G T A C

Bcl6/MA0463.1/Jaspar

Match Rank:5
Score:0.61
Offset:2
Orientation:forward strand
Alignment:GGTTACCTAG------
--TTTCCTAGAAAGCA
 C T A G C T A G G C A T A C G T C T G A A G T C A G T C A C G T C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C A G T C G A T A G C T G T A C A G T C A C G T T C G A C T A G C T G A T C G A C T G A C A T G G T A C G C T A

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:6
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GGTTACCTAG
BNTGDCCTTG
 C T A G C T A G G C A T A C G T C T G A A G T C A G T C A C G T C G T A A C T G
A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:7
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:GGTTACCTAG--
--TGACCTTGAV
 C T A G C T A G G C A T A C G T C T G A A G T C A G T C A C G T C G T A A C T G A C G T A C G T
A C G T A C G T G C A T C T A G C T G A G A T C G T A C G A C T G A C T A T C G C T G A T G C A

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:GGTTACCTAG---
---TGCCCAGNHW
 C T A G C T A G G C A T A C G T C T G A A G T C A G T C A C G T C G T A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A

ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer

Match Rank:9
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GGTTACCTAG
RYHYACCTGB
 C T A G C T A G G C A T A C G T C T G A A G T C A G T C A C G T C G T A A C T G
T C A G A G C T G C T A A G T C C G T A G T A C A T G C A C G T A C T G A C G T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:10
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:GGTTACCTAG--
--TGACCTTGAN
 C T A G C T A G G C A T A C G T C T G A A G T C A G T C A C G T C G T A A C T G A C G T A C G T
A C G T A C G T G C A T C T A G C T G A T G A C G A T C A G C T C A G T A T C G C T G A T G C A