Information for 1-GAAAGCACAT (Motif 20)

T A C G C G T A G T C A C T G A T A C G G T A C C G T A T A G C C G T A G A C T
Reverse Opposite:
C T G A C G A T A T C G A C G T A C T G A T G C A G C T A C G T A C G T A T G C
p-value:1e-9
log p-value:-2.210e+01
Information Content per bp:1.739
Number of Target Sequences with motif32.0
Percentage of Target Sequences with motif4.53%
Number of Background Sequences with motif581.1
Percentage of Background Sequences with motif1.18%
Average Position of motif in Targets51.5 +/- 27.7bp
Average Position of motif in Background50.0 +/- 28.3bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:1
Score:0.74
Offset:1
Orientation:forward strand
Alignment:GAAAGCACAT-
-AAACCACANN
 T A C G C G T A G T C A C T G A T A C G G T A C C G T A T A G C C G T A G A C T A C G T
A C G T G C T A C T G A T C G A A G T C A G T C C T G A A G T C G T C A C T G A T G C A

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---GAAAGCACAT
ACTGAAACCA---
 A C G T A C G T A C G T T A C G C G T A G T C A C T G A T A C G G T A C C G T A T A G C C G T A G A C T
G C T A T A G C A G C T A T C G G T C A C G T A G C T A A T G C G A T C C T G A A C G T A C G T A C G T

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:3
Score:0.71
Offset:0
Orientation:forward strand
Alignment:GAAAGCACAT
NAAACCACAG
 T A C G C G T A G T C A C T G A T A C G G T A C C G T A T A G C C G T A G A C T
T A G C G C T A T C G A C T G A A G T C A G T C C T G A A G T C C G T A C T A G

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:4
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:GAAAGCACAT-
-AAACCACAGC
 T A C G C G T A G T C A C T G A T A C G G T A C C G T A T A G C C G T A G A C T A C G T
A C G T G C T A T C G A T G C A T G A C G T A C T G C A A G T C C T G A C T A G T G A C

RUNX1/MA0002.2/Jaspar

Match Rank:5
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:GAAAGCACAT--
-AAACCACAGAN
 T A C G C G T A G T C A C T G A T A C G G T A C C G T A T A G C C G T A G A C T A C G T A C G T
A C G T G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C

FOXH1/MA0479.1/Jaspar

Match Rank:6
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--GAAAGCACAT
TCCAATCCACA-
 A C G T A C G T T A C G C G T A G T C A C T G A T A C G G T A C C G T A T A G C C G T A G A C T
A G C T A G T C T A G C C G T A C G T A A C G T G T A C G T A C C G T A A G T C C G T A A C G T

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:7
Score:0.66
Offset:0
Orientation:forward strand
Alignment:GAAAGCACAT--
NWAACCACADNN
 T A C G C G T A G T C A C T G A T A C G G T A C C G T A T A G C C G T A G A C T A C G T A C G T
T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C

PH0037.1_Hdx/Jaspar

Match Rank:8
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----GAAAGCACAT--
AAGGCGAAATCATCGCA
 A C G T A C G T A C G T A C G T A C G T T A C G C G T A G T C A C T G A T A C G G T A C C G T A T A G C C G T A G A C T A C G T A C G T
C G T A C T G A A C T G C A T G G T A C C T A G T G C A C G T A C G T A A C G T A T G C G C T A G A C T G A T C A T C G G T A C T G C A

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:9
Score:0.64
Offset:2
Orientation:forward strand
Alignment:GAAAGCACAT--
--AAGCACTTAA
 T A C G C G T A G T C A C T G A T A C G G T A C C G T A T A G C C G T A G A C T A C G T A C G T
A C G T A C G T T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A

PB0208.1_Zscan4_2/Jaspar

Match Rank:10
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GAAAGCACAT------
CGAAGCACACAAAATA
 T A C G C G T A G T C A C T G A T A C G G T A C C G T A T A G C C G T A G A C T A C G T A C G T A C G T A C G T A C G T A C G T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A