Information for 13-ACAGGCTTGAGKGRGA (Motif 18)

C T G A A G T C C T G A A C T G A T C G A T G C A C G T A C G T A T C G C G T A A T C G C A G T A C T G C T G A A T C G C G T A
Reverse Opposite:
A C G T A T G C A G C T A G T C G T C A A T G C G A C T T A G C G T C A C G T A A T C G A T G C G T A C A G C T A C T G A G C T
p-value:1e-9
log p-value:-2.257e+01
Information Content per bp:1.746
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.71%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets33.4 +/- 24.2bp
Average Position of motif in Background34.6 +/- 2.2bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:1
Score:0.61
Offset:1
Orientation:forward strand
Alignment:ACAGGCTTGAGKGRGA
-GGGGCTYGKCTGGGA
 C T G A A G T C C T G A A C T G A T C G A T G C A C G T A C G T A T C G C G T A A T C G C A G T A C T G C T G A A T C G C G T A
A C G T C T A G C A T G C A T G T A C G A G T C G C A T A G C T C T A G A C G T A G T C G A C T A C T G A C T G A C T G T C G A

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:2
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-ACAGGCTTGAGKGRGA
GTCATGCHTGRCTGS--
 A C G T C T G A A G T C C T G A A C T G A T C G A T G C A C G T A C G T A T C G C G T A A T C G C A G T A C T G C T G A A T C G C G T A
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C A C G T A C G T

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--ACAGGCTTGAGKGRGA
NGTCACGCTTGGCTGC--
 A C G T A C G T C T G A A G T C C T G A A C T G A T C G A T G C A C G T A C G T A T C G C G T A A T C G C A G T A C T G C T G A A T C G C G T A
C T A G A C T G A G C T A G T C G T C A G A T C T C A G A T G C G C A T G A C T A T C G T C A G T A G C G A C T C T A G T G A C A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:4
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-ACAGGCTTGAGKGRGA
CACAGN-----------
 A C G T C T G A A G T C C T G A A C T G A T C G A T G C A C G T A C G T A T C G C G T A A T C G C A G T A C T G C T G A A T C G C G T A
T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:5
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:ACAGGCTTGAGKGRGA-
--RGSMTBCTGGGAAAT
 C T G A A G T C C T G A A C T G A T C G A T G C A C G T A C G T A T C G C G T A A T C G C A G T A C T G C T G A A T C G C G T A A C G T
A C G T A C G T C T A G A C T G T A G C G T C A A G C T A G C T T G A C G A C T A C T G A C T G A C T G C G T A T C G A C G T A A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:6
Score:0.50
Offset:6
Orientation:reverse strand
Alignment:ACAGGCTTGAGKGRGA--
------BTGABTGACAGS
 C T G A A G T C C T G A A C T G A T C G A T G C A C G T A C G T A T C G C G T A A T C G C A G T A C T G C T G A A T C G C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C

PB0114.1_Egr1_2/Jaspar

Match Rank:7
Score:0.50
Offset:4
Orientation:forward strand
Alignment:ACAGGCTTGAGKGRGA----
----TGCGGAGTGGGACTGG
 C T G A A G T C C T G A A C T G A T C G A T G C A C G T A C G T A T C G C G T A A T C G C A G T A C T G C T G A A T C G C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C T G G A T C A C T G C T A G T C G A C T A G C A G T C T A G C A T G C A T G C G T A G A T C G C A T C T A G A C T G

Nr2e3/MA0164.1/Jaspar

Match Rank:8
Score:0.50
Offset:1
Orientation:forward strand
Alignment:ACAGGCTTGAGKGRGA
-CAAGCTT--------
 C T G A A G T C C T G A A C T G A T C G A T G C A C G T A C G T A T C G C G T A A T C G C A G T A C T G C T G A A T C G C G T A
A C G T G A T C C G T A C G T A A T C G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.50
Offset:6
Orientation:reverse strand
Alignment:ACAGGCTTGAGKGRGA--
------NTGATTGACAGN
 C T G A A G T C C T G A A C T G A T C G A T G C A C G T A C G T A T C G C G T A A T C G C A G T A C T G C T G A A T C G C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:10
Score:0.49
Offset:5
Orientation:reverse strand
Alignment:ACAGGCTTGAGKGRGA
-----CTTGAGTGGCT
 C T G A A G T C C T G A A C T G A T C G A T G C A C G T A C G T A T C G C G T A A T C G C A G T A C T G C T G A A T C G C G T A
A C G T A C G T A C G T A C G T A C G T A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T