Information for 5-VTGDGTTAGTTAT (Motif 6)

T A C G A C G T A C T G C T A G C T A G A C G T A C G T C T G A C T A G A C G T A C G T C G T A A C G T
Reverse Opposite:
C G T A A C G T C G T A C G T A A G T C A G C T C G T A C G T A A G T C G A T C A G T C C G T A A G T C
p-value:1e-9
log p-value:-2.249e+01
Information Content per bp:1.856
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.04%
Number of Background Sequences with motif3.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets59.5 +/- 25.0bp
Average Position of motif in Background53.4 +/- 33.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)2.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HMBOX1/MA0895.1/Jaspar

Match Rank:1
Score:0.68
Offset:4
Orientation:forward strand
Alignment:VTGDGTTAGTTAT-
----ACTAGTTAAC
 T A C G A C G T A C T G C T A G C T A G A C G T A C G T C T G A C T A G A C G T A C G T C G T A A C G T A C G T
A C G T A C G T A C G T A C G T T G C A A G T C C G A T C T G A A T C G C G A T G C A T C G T A G T C A T A G C

PH0040.1_Hmbox1/Jaspar

Match Rank:2
Score:0.64
Offset:0
Orientation:forward strand
Alignment:VTGDGTTAGTTAT----
GAAAACTAGTTAACATC
 T A C G A C G T A C T G C T A G C T A G A C G T A C G T C T G A C T A G A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T
T C A G G C T A C T G A C T G A C G T A A G T C A C G T C T G A C T A G A C G T G C A T C G T A C G T A A G T C C G T A C G A T A T G C

PB0119.1_Foxa2_2/Jaspar

Match Rank:3
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:VTGDGTTAGTTAT----
--NCNTTTGTTATTTNN
 T A C G A C G T A C T G C T A G C T A G A C G T A C G T C T G A C T A G A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A T G C A T G C A T C G A G C T C A G T C A G T C T A G G C A T G A C T T C G A C A G T G A C T G C A T A G C T A G C T

PH0167.1_Tcf1/Jaspar

Match Rank:4
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:VTGDGTTAGTTAT------
--NTTTTAGTTAACNNAGN
 T A C G A C G T A C T G C T A G C T A G A C G T A C G T C T G A C T A G A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T G C A G A C T G C A T A C G T G A C T C T G A A T C G G C A T C G A T C G T A C T G A T A G C A G C T T C G A T G C A T A C G C T A G

PH0020.1_Dlx1/Jaspar

Match Rank:5
Score:0.61
Offset:0
Orientation:forward strand
Alignment:VTGDGTTAGTTAT-
CTGAGGTAATTAAT
 T A C G A C G T A C T G C T A G C T A G A C G T A C G T C T G A C T A G A C G T A C G T C G T A A C G T A C G T
A G T C A G C T C T A G T G C A C T A G C T A G G A C T T C G A C G T A C G A T A C G T C T G A C G T A A G C T

Hoxd3/MA0912.1/Jaspar

Match Rank:6
Score:0.61
Offset:0
Orientation:forward strand
Alignment:VTGDGTTAGTTAT---
TTGAGTTAATTAACCT
 T A C G A C G T A C T G C T A G C T A G A C G T A C G T C T G A C T A G A C G T A C G T C G T A A C G T A C G T A C G T A C G T
G A C T C G A T C A T G C T G A C A T G A C G T G A C T G T C A G C T A C A G T A C G T C T G A T G A C G A T C A T G C A G C T

PH0079.1_Hoxd3/Jaspar

Match Rank:7
Score:0.61
Offset:0
Orientation:forward strand
Alignment:VTGDGTTAGTTAT---
TTGAGTTAATTAACCT
 T A C G A C G T A C T G C T A G C T A G A C G T A C G T C T G A C T A G A C G T A C G T C G T A A C G T A C G T A C G T A C G T
G A C T C G A T C A T G C T G A C A T G A C G T G A C T G T C A G C T A C A G T A C G T C T G A T G A C G A T C A T G C A G C T

PB0081.1_Tcf1_1/Jaspar

Match Rank:8
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:VTGDGTTAGTTAT------
--NNNTTAGTTAACTNANN
 T A C G A C G T A C T G C T A G C T A G A C G T A C G T C T G A C T A G A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G A C T C A G T G A C T A G C T G A C T C T G A T A C G G A C T C G A T C G T A C G T A A G T C A G C T C T G A T C G A C T A G A C G T

PH0174.1_Vax1/Jaspar

Match Rank:9
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:VTGDGTTAGTTAT---
CTNNGNTAATTAACNT
 T A C G A C G T A C T G C T A G C T A G A C G T A C G T C T G A C T A G A C G T A C G T C G T A A C G T A C G T A C G T A C G T
G A T C G C A T C T A G C T A G T C A G A G C T G A C T G T C A G C T A C G A T C A G T C T G A C G T A A G T C A T C G A C G T

PH0168.1_Hnf1b/Jaspar

Match Rank:10
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:VTGDGTTAGTTAT-----
-ANNNCTAGTTAACNGNN
 T A C G A C G T A C T G C T A G C T A G A C G T A C G T C T G A C T A G A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C T G A T A G C C T A G T C A G A G T C G C A T T C G A C T A G C A G T C G A T C G T A C G T A A G T C T G C A C T A G T G A C G C A T