Information for 1-CASAGSRMCCTGA (Motif 1)

A G T C C G T A A T G C C G T A A T C G A T C G C T G A G T A C A G T C A G T C A C G T A C T G C G T A
Reverse Opposite:
A C G T A G T C C G T A A C T G A C T G C A T G A G C T A T G C A T G C A C G T A T C G A C G T A C T G
p-value:1e-12
log p-value:-2.796e+01
Information Content per bp:1.873
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.04%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets59.1 +/- 26.8bp
Average Position of motif in Background34.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.40
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:1
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CASAGSRMCCTGA
ACAAAGGNBCCT--
 A C G T A G T C C G T A A T G C C G T A A T C G A T C G C T G A G T A C A G T C A G T C A C G T A C T G C G T A
G C T A T A G C C G T A T C G A C G T A T C A G T A C G T C A G A G T C A G T C G A T C G C A T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:2
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CASAGSRMCCTGA
CACAGN-------
 A G T C C G T A A T G C C G T A A T C G A T C G C T G A G T A C A G T C A G T C A C G T A C T G C G T A
T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:3
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:CASAGSRMCCTGA---
----GWAAYHTGABMC
 A G T C C G T A A T G C C G T A A T C G A T C G C T G A G T A C A G T C A G T C A C G T A C T G C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C T G C G A T G T C A C G T A A G T C G T A C G C A T A C T G C G T A A C G T G T A C G A T C

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---CASAGSRMCCTGA
GGTCANNGTGACCTN-
 A C G T A C G T A C G T A G T C C G T A A T G C C G T A A T C G A T C G C T G A G T A C A G T C A G T C A C G T A C T G C G T A
C A T G C T A G C A G T A G T C C G T A A T G C T A C G T A C G G C A T T C A G G T C A G A T C G T A C G A C T A C G T A C G T

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:5
Score:0.51
Offset:4
Orientation:forward strand
Alignment:CASAGSRMCCTGA---
----GWAAYHTGAKMC
 A G T C C G T A A T G C C G T A A T C G A T C G C T G A G T A C A G T C A G T C A C G T A C T G C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T A G C G T A G T C A C G T A A G T C G A T C A G C T C T A G C G T A A C G T G T C A G A T C

Esrra/MA0592.2/Jaspar

Match Rank:6
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:CASAGSRMCCTGA-
---ATGACCTTGAA
 A G T C C G T A A T G C C G T A A T C G A T C G C T G A G T A C A G T C A G T C A C G T A C T G C G T A A C G T
A C G T A C G T A C G T C G T A A G C T T A C G T G C A T G A C T G A C A G C T A G C T A T C G C T G A T G C A

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-CASAGSRMCCTGA--
GCAGCCAAGCGTGACN
 A C G T A G T C C G T A A T G C C G T A A T C G A T C G C T G A G T A C A G T C A G T C A C G T A C T G C G T A A C G T A C G T
A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:8
Score:0.50
Offset:-3
Orientation:forward strand
Alignment:---CASAGSRMCCTGA
CCGCATAGCAACGGA-
 A C G T A C G T A C G T A G T C C G T A A T G C C G T A A T C G A T C G C T G A G T A C A G T C A G T C A C G T A C T G C G T A
A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A A C G T

ESR1/MA0112.3/Jaspar

Match Rank:9
Score:0.50
Offset:-5
Orientation:forward strand
Alignment:-----CASAGSRMCCTGA
AAGGTCACGGTGACCTG-
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A T G C C G T A A T C G A T C G C T G A G T A C A G T C A G T C A C G T A C T G C G T A
C T G A T C G A A C T G C T A G A C G T G A T C C T G A T G A C T A C G T C A G A G C T C T A G T C G A A T G C G T A C A G C T A C T G A C G T

SNAI2/MA0745.1/Jaspar

Match Rank:10
Score:0.50
Offset:5
Orientation:reverse strand
Alignment:CASAGSRMCCTGA-
-----NCACCTGTN
 A G T C C G T A A T G C C G T A A T C G A T C G C T G A G T A C A G T C A G T C A C G T A C T G C G T A A C G T
A C G T A C G T A C G T A C G T A C G T T C G A G T A C C T G A G A T C G A T C C G A T C A T G G A C T G A C T