Information for 3-ACCTGGCAGACAG (Motif 3)

C G T A A T G C A G T C A C G T A C T G A C T G A G T C C G T A A C T G C G T A A G T C C G T A A C T G
Reverse Opposite:
A G T C A C G T A C T G A C G T A G T C A C G T A C T G A G T C T A G C C G T A A C T G A T C G C G A T
p-value:1e-13
log p-value:-3.119e+01
Information Content per bp:1.914
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.77%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets49.8 +/- 28.2bp
Average Position of motif in Background58.7 +/- 3.9bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.71
Offset:5
Orientation:reverse strand
Alignment:ACCTGGCAGACAG
-----CCAGACAG
 C G T A A T G C A G T C A C G T A C T G A C T G A G T C C G T A A C T G C G T A A G T C C G T A A C T G
A C G T A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:2
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:ACCTGGCAGACAG
AGGTGNCAGACAG
 C G T A A T G C A G T C A C G T A C T G A C T G A G T C C G T A A C T G C G T A A G T C C G T A A C T G
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.69
Offset:5
Orientation:reverse strand
Alignment:ACCTGGCAGACAG--
-----CCAGACRSVB
 C G T A A T G C A G T C A C G T A C T G A C T G A G T C C G T A A C T G C G T A A G T C C G T A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.67
Offset:0
Orientation:forward strand
Alignment:ACCTGGCAGACAG
AGGTGHCAGACA-
 C G T A A T G C A G T C A C G T A C T G A C T G A G T C C G T A A C T G C G T A A G T C C G T A A C T G
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.64
Offset:5
Orientation:reverse strand
Alignment:ACCTGGCAGACAG
-----BCAGACWA
 C G T A A T G C A G T C A C G T A C T G A C T G A G T C C G T A A C T G C G T A A G T C C G T A A C T G
A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:6
Score:0.60
Offset:2
Orientation:forward strand
Alignment:ACCTGGCAGACAG---
--CTGGCAGNCTGCCA
 C G T A A T G C A G T C A C G T A C T G A C T G A G T C C G T A A C T G C G T A A G T C C G T A A C T G A C G T A C G T A C G T
A C G T A C G T A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:ACCTGGCAGACAG
-CTTGGCAA----
 C G T A A T G C A G T C A C G T A C T G A C T G A G T C C G T A A C T G C G T A A G T C C G T A A C T G
A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:8
Score:0.60
Offset:0
Orientation:forward strand
Alignment:ACCTGGCAGACAG----
CAAATCCAGACATCACA
 C G T A A T G C A G T C A C G T A C T G A C T G A G T C C G T A A C T G C G T A A G T C C G T A A C T G A C G T A C G T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:9
Score:0.57
Offset:0
Orientation:forward strand
Alignment:ACCTGGCAGACAG
GSCTGTCACTCA-
 C G T A A T G C A G T C A C G T A C T G A C T G A G T C C G T A A C T G C G T A A G T C C G T A A C T G
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:10
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:ACCTGGCAGACAG
--ATGCCAGACN-
 C G T A A T G C A G T C A C G T A C T G A C T G A G T C C G T A A C T G C G T A A G T C C G T A A C T G
A C G T A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T