Information for 4-BTAATCCCCT (Motif 3)

A T C G C G A T T C G A G T C A A G C T A G T C G T A C G A T C G T A C C G A T
Reverse Opposite:
G C T A C A T G C T A G C A T G T C A G T C G A C A G T A G C T G C T A T A G C
p-value:1e-28
log p-value:-6.470e+01
Information Content per bp:1.639
Number of Target Sequences with motif90.0
Percentage of Target Sequences with motif10.64%
Number of Background Sequences with motif1033.1
Percentage of Background Sequences with motif2.59%
Average Position of motif in Targets52.4 +/- 24.9bp
Average Position of motif in Background49.8 +/- 31.8bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Crx/MA0467.1/Jaspar

Match Rank:1
Score:0.92
Offset:0
Orientation:reverse strand
Alignment:BTAATCCCCT-
CTAATCCTCTT
 A T C G C G A T T C G A G T C A A G C T A G T C G T A C G A T C G T A C C G A T A C G T
G A T C C G A T C T G A C G T A A C G T A G T C G A T C A G C T G A T C G A C T A G C T

GSC2/MA0891.1/Jaspar

Match Rank:2
Score:0.90
Offset:-1
Orientation:forward strand
Alignment:-BTAATCCCCT
CCTAATCCGC-
 A C G T A T C G C G A T T C G A G T C A A G C T A G T C G T A C G A T C G T A C C G A T
T G A C G A T C C G A T G C T A G C T A A C G T G T A C A G T C A T C G G A T C A C G T

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:3
Score:0.90
Offset:0
Orientation:reverse strand
Alignment:BTAATCCCCT
YTAATCCY--
 A T C G C G A T T C G A G T C A A G C T A G T C G T A C G A T C G T A C C G A T
G A T C G C A T C G T A C G T A A C G T G A T C G A T C A G T C A C G T A C G T

PITX3/MA0714.1/Jaspar

Match Rank:4
Score:0.90
Offset:-1
Orientation:forward strand
Alignment:-BTAATCCCCT
CTTAATCCC--
 A C G T A T C G C G A T T C G A G T C A A G C T A G T C G T A C G A T C G T A C C G A T
T A G C G A C T G C A T C T G A C T G A C A G T G T A C A G T C G A T C A C G T A C G T

Pitx1/MA0682.1/Jaspar

Match Rank:5
Score:0.90
Offset:0
Orientation:forward strand
Alignment:BTAATCCCCT
TTAATCCC--
 A T C G C G A T T C G A G T C A A G C T A G T C G T A C G A T C G T A C C G A T
G A C T G C A T T C G A C G T A C A G T G A T C G A T C G T A C A C G T A C G T

GSC/MA0648.1/Jaspar

Match Rank:6
Score:0.90
Offset:-1
Orientation:forward strand
Alignment:-BTAATCCCCT
GCTAATCCCC-
 A C G T A T C G C G A T T C G A G T C A A G C T A G T C G T A C G A T C G T A C C G A T
T A C G G A T C A G C T C T G A C G T A A C G T A G T C A G T C A T G C G A T C A C G T

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:7
Score:0.89
Offset:-1
Orientation:forward strand
Alignment:-BTAATCCCCT
NYTAATCCYB-
 A C G T A T C G C G A T T C G A G T C A A G C T A G T C G T A C G A T C G T A C C G A T
A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T A C G T

OTX2/MA0712.1/Jaspar

Match Rank:8
Score:0.88
Offset:0
Orientation:forward strand
Alignment:BTAATCCCCT
TTAATCCT--
 A T C G C G A T T C G A G T C A A G C T A G T C G T A C G A T C G T A C C G A T
G A C T G C A T C G T A C G T A C A G T G A T C A G T C A C G T A C G T A C G T

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:9
Score:0.88
Offset:1
Orientation:forward strand
Alignment:BTAATCCCCT
-TAATCCCN-
 A T C G C G A T T C G A G T C A A G C T A G T C G T A C G A T C G T A C C G A T
A C G T C G A T C T G A C G T A C A G T A G T C G A T C G A T C A C T G A C G T

PH0015.1_Crx/Jaspar

Match Rank:10
Score:0.87
Offset:-3
Orientation:reverse strand
Alignment:---BTAATCCCCT---
AGGCTAATCCCCAANG
 A C G T A C G T A C G T A T C G C G A T T C G A G T C A A G C T A G T C G T A C G A T C G T A C C G A T A C G T A C G T A C G T
G T C A T A C G T C A G G A T C C G A T C G T A C G T A A C G T A G T C A G T C A T G C A T G C G C T A G C T A T G A C T C A G