Information for 9-CCMAGAMRATGAG (Motif 16)

A G T C G T A C G T A C C G T A A C T G C G T A T G A C C T A G C G T A A C G T A C T G C G T A A T C G
Reverse Opposite:
A T G C A C G T A G T C C G T A A C G T A G T C A C G T A C G T G T A C A C G T A C T G A C T G A C T G
p-value:1e-9
log p-value:-2.148e+01
Information Content per bp:1.883
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.38%
Number of Background Sequences with motif9.0
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets49.4 +/- 31.1bp
Average Position of motif in Background51.5 +/- 23.5bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0152.1_Pou6f1_2/Jaspar

Match Rank:1
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CCMAGAMRATGAG-----
-AAACATAATGAGGTTGC
 A G T C G T A C G T A C C G T A A C T G C G T A T G A C C T A G C G T A A C G T A C T G C G T A A T C G A C G T A C G T A C G T A C G T A C G T
A C G T T C G A G T C A G C T A T A G C G C T A C G A T C G T A C G T A A C G T C A T G C G T A A C T G T A C G G C A T C A G T A C T G G T A C

PH0151.1_Pou6f1_1/Jaspar

Match Rank:2
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CCMAGAMRATGAG-----
-GACGATAATGAGCTTGC
 A G T C G T A C G T A C C G T A A C T G C G T A T G A C C T A G C G T A A C G T A C T G C G T A A T C G A C G T A C G T A C G T A C G T A C G T
A C G T T A C G G C T A T G A C T A C G G C T A C G A T C G T A C G T A A C G T C A T G C G T A A C T G A T C G G C A T C A G T C T A G G T A C

Sox17/MA0078.1/Jaspar

Match Rank:3
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:CCMAGAMRATGAG
----GACAATGNN
 A G T C G T A C G T A C C G T A A C T G C G T A T G A C C T A G C G T A A C G T A C T G C G T A A T C G
A C G T A C G T A C G T A C G T T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G

Sox6/MA0515.1/Jaspar

Match Rank:4
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:CCMAGAMRATGAG
--AAAACAATGG-
 A G T C G T A C G T A C C G T A A C T G C G T A T G A C C T A G C G T A A C G T A C T G C G T A A T C G
A C G T A C G T T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G A C G T

Crx/MA0467.1/Jaspar

Match Rank:5
Score:0.56
Offset:2
Orientation:forward strand
Alignment:CCMAGAMRATGAG
--AAGAGGATTAG
 A G T C G T A C G T A C C G T A A C T G C G T A T G A C C T A G C G T A A C G T A C T G C G T A A T C G
A C G T A C G T T C G A C T G A C T A G T C G A C T A G A C T G G T C A A C G T A G C T C G T A C T A G

PB0177.1_Sox7_2/Jaspar

Match Rank:6
Score:0.56
Offset:-6
Orientation:reverse strand
Alignment:------CCMAGAMRATGAG---
NNCNNNCNCANACAATTAGNAC
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C G T A C G T A C C G T A A C T G C G T A T G A C C T A G C G T A A C G T A C T G C G T A A T C G A C G T A C G T A C G T
T C G A A T C G T G A C C A T G A G C T G T C A A G T C C G T A A T G C C T G A A T G C C G T A A G T C C G T A C G T A G C A T C A G T G C T A T A C G A T G C G C T A T G A C

PB0132.1_Hbp1_2/Jaspar

Match Rank:7
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:CCMAGAMRATGAG----
NNTNNACAATGGGANNN
 A G T C G T A C G T A C C G T A A C T G C G T A T G A C C T A G C G T A A C G T A C T G C G T A A T C G A C G T A C G T A C G T A C G T
C G T A T A C G A G C T C G T A A G T C G T C A G T A C C G T A C G T A C G A T C T A G C T A G A C T G T C G A G T C A G A T C G C T A

Stat5a::Stat5b/MA0519.1/Jaspar

Match Rank:8
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----CCMAGAMRATGAG
ATTTCCAAGAA------
 A C G T A C G T A C G T A C G T A G T C G T A C G T A C C G T A A C T G C G T A T G A C C T A G C G T A A C G T A C T G C G T A A T C G
C T G A A G C T A C G T A G C T A G T C G A T C G T C A C T G A A C T G G C T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:CCMAGAMRATGAG
-CCAGACAG----
 A G T C G T A C G T A C C G T A A C T G C G T A T G A C C T A G C G T A A C G T A C T G C G T A A T C G
A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--CCMAGAMRATGAG
TGCCCAGNHW-----
 A C G T A C G T A G T C G T A C G T A C C G T A A C T G C G T A T G A C C T A G C G T A A C G T A C T G C G T A A T C G
C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A A C G T A C G T A C G T A C G T A C G T