p-value: | 1e-9 |
log p-value: | -2.185e+01 |
Information Content per bp: | 1.846 |
Number of Target Sequences with motif | 4.0 |
Percentage of Target Sequences with motif | 0.92% |
Number of Background Sequences with motif | 1.4 |
Percentage of Background Sequences with motif | 0.00% |
Average Position of motif in Targets | 49.2 +/- 5.1bp |
Average Position of motif in Background | 66.0 +/- 5.0bp |
Strand Bias (log2 ratio + to - strand density) | 0.0 |
Multiplicity (# of sites on avg that occur together) | 1.00 |
Motif File: | file (matrix) reverse opposite |
SVG Files for Logos: | forward logo reverse opposite |
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer
Match Rank: | 1 |
Score: | 0.68 |
Offset: | -1 |
Orientation: | forward strand |
Alignment: | -GCCATTCACGCCC GGCCATTAAC---- |
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POL004.1_CCAAT-box/Jaspar
Match Rank: | 2 |
Score: | 0.64 |
Offset: | -4 |
Orientation: | forward strand |
Alignment: | ----GCCATTCACGCCC ACTAGCCAATCA----- |
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MGA/MA0801.1/Jaspar
Match Rank: | 3 |
Score: | 0.58 |
Offset: | 5 |
Orientation: | reverse strand |
Alignment: | GCCATTCACGCCC -----TCACACCT |
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Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer
Match Rank: | 4 |
Score: | 0.58 |
Offset: | 3 |
Orientation: | forward strand |
Alignment: | GCCATTCACGCCC ---ATTAACACCT |
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YY2/MA0748.1/Jaspar
Match Rank: | 5 |
Score: | 0.58 |
Offset: | -4 |
Orientation: | forward strand |
Alignment: | ----GCCATTCACGCCC GTCCGCCATTA------ |
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TBX2/MA0688.1/Jaspar
Match Rank: | 6 |
Score: | 0.58 |
Offset: | 3 |
Orientation: | reverse strand |
Alignment: | GCCATTCACGCCC- ---TTTCACACCTN |
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Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer
Match Rank: | 7 |
Score: | 0.57 |
Offset: | 1 |
Orientation: | reverse strand |
Alignment: | GCCATTCACGCCC -YCATTAMC---- |
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Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer
Match Rank: | 8 |
Score: | 0.56 |
Offset: | -3 |
Orientation: | forward strand |
Alignment: | ---GCCATTCACGCCC SCTGTCAVTCAV---- |
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PB0143.1_Klf7_2/Jaspar
Match Rank: | 9 |
Score: | 0.56 |
Offset: | 1 |
Orientation: | forward strand |
Alignment: | GCCATTCACGCCC----- -AAGCATACGCCCAACTT |
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TBX21/MA0690.1/Jaspar
Match Rank: | 10 |
Score: | 0.56 |
Offset: | 4 |
Orientation: | reverse strand |
Alignment: | GCCATTCACGCCC- ----TTCACACCTT |
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