Information for 12-TCCGTCAAGCCTA (Motif 16)

A C G T A G T C A G T C A T C G A C G T A T G C T G C A C T G A A C T G A G T C A G T C A G C T T C G A
Reverse Opposite:
A C G T C T G A A C T G C T A G A G T C A G C T A C G T A T C G T C G A A T G C C T A G A C T G C G T A
p-value:1e-10
log p-value:-2.322e+01
Information Content per bp:1.806
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.06%
Number of Background Sequences with motif23.4
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets48.6 +/- 23.5bp
Average Position of motif in Background39.2 +/- 31.4bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:1
Score:0.56
Offset:6
Orientation:forward strand
Alignment:TCCGTCAAGCCTA-
------AGGCCTAG
 A C G T A G T C A G T C A T C G A C G T A T G C T G C A C T G A A C T G A G T C A G T C A G C T T C G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T G C A A C T G T A C G A T G C A G T C G A C T T C G A A T C G

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.56
Offset:6
Orientation:forward strand
Alignment:TCCGTCAAGCCTA-
------AGGCCTNG
 A C G T A G T C A G T C A T C G A C G T A T G C T G C A C T G A A C T G A G T C A G T C A G C T T C G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G

PB0180.1_Sp4_2/Jaspar

Match Rank:3
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:TCCGTCAAGCCTA--
NNGGCCACGCCTTTN
 A C G T A G T C A G T C A T C G A C G T A T G C T G C A C T G A A C T G A G T C A G T C A G C T T C G A A C G T A C G T
G T A C C A G T C T A G C T A G T G A C G A T C T G C A T G A C A C T G T G A C T A G C A G C T G C A T G C A T T C A G

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:4
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---TCCGTCAAGCCTA
ATTTCCCAGVAKSCY-
 A C G T A C G T A C G T A C G T A G T C A G T C A T C G A C G T A T G C T G C A C T G A A C T G A G T C A G T C A G C T T C G A
T G C A G C A T A G C T G C A T A G T C A G T C A G T C C T G A A C T G T C G A T C G A C A G T A T C G A G T C G A T C A C G T

Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer

Match Rank:5
Score:0.51
Offset:-4
Orientation:forward strand
Alignment:----TCCGTCAAGCCTA
NRYTTCCGGH-------
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C A T C G A C G T A T G C T G C A C T G A A C T G A G T C A G T C A G C T T C G A
A G T C C T G A A G T C C G A T C A G T G A T C A T G C A C T G A T C G G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SMAD3/MA0795.1/Jaspar

Match Rank:6
Score:0.51
Offset:2
Orientation:forward strand
Alignment:TCCGTCAAGCCTA
--CGTCTAGACA-
 A C G T A G T C A G T C A T C G A C G T A T G C T G C A C T G A A C T G A G T C A G T C A G C T T C G A
A C G T A C G T G A T C C T A G C G A T T A G C A G C T T G C A A T C G G T C A G A T C G C T A A C G T

PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer

Match Rank:7
Score:0.50
Offset:-5
Orientation:forward strand
Alignment:-----TCCGTCAAGCCTA--
NGTGTTCAVTSAAGCGKAAA
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C A T C G A C G T A T G C T G C A C T G A A C T G A G T C A G T C A G C T T C G A A C G T A C G T
A G C T T A C G C G A T T C A G A G C T A C G T G A T C C T G A T A G C A G C T A T G C C T G A C G T A A T C G A G T C C T A G A C T G C T G A G T C A T C G A

Nr2e3/MA0164.1/Jaspar

Match Rank:8
Score:0.50
Offset:5
Orientation:forward strand
Alignment:TCCGTCAAGCCTA
-----CAAGCTT-
 A C G T A G T C A G T C A T C G A C G T A T G C T G C A C T G A A C T G A G T C A G T C A G C T T C G A
A C G T A C G T A C G T A C G T A C G T G A T C C G T A C G T A A T C G A G T C A C G T A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:9
Score:0.50
Offset:0
Orientation:reverse strand
Alignment:TCCGTCAAGCCTA--
SCAGYCADGCATGAC
 A C G T A G T C A G T C A T C G A C G T A T G C T G C A C T G A A C T G A G T C A G T C A G C T T C G A A C G T A C G T
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:10
Score:0.50
Offset:5
Orientation:reverse strand
Alignment:TCCGTCAAGCCTA
-----BCAGACWA
 A C G T A G T C A G T C A T C G A C G T A T G C T G C A C T G A A C T G A G T C A G T C A G C T T C G A
A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A