Information for 3-GTTTGCGAAC (Motif 5)

A C T G C G A T A C G T C A G T A C T G A G T C A T C G G C T A C T G A A G T C
Reverse Opposite:
C T A G A G C T C G A T A T G C A C T G A G T C G C T A G T C A C G T A A G T C
p-value:1e-12
log p-value:-2.859e+01
Information Content per bp:1.846
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.00%
Number of Background Sequences with motif10.0
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets37.7 +/- 19.3bp
Average Position of motif in Background37.8 +/- 34.9bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIA/MA0670.1/Jaspar

Match Rank:1
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GTTTGCGAAC-
-GGTGCCAAGT
 A C T G C G A T A C G T C A G T A C T G A G T C A T C G G C T A C T G A A G T C A C G T
A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

PB0044.1_Mtf1_1/Jaspar

Match Rank:2
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GTTTGCGAAC-----
NNTTTGCACACGGCCC
 A C G T A C T G C G A T A C G T C A G T A C T G A G T C A T C G G C T A C T G A A G T C A C G T A C G T A C G T A C G T A C G T
C G A T G A C T C A G T A C G T G A C T A C T G G A T C C T G A A G T C G C T A G A T C A C T G C T A G G A T C T A G C G T A C

Hic1/MA0739.1/Jaspar

Match Rank:3
Score:0.56
Offset:2
Orientation:forward strand
Alignment:GTTTGCGAAC-
--ATGCCAACC
 A C T G C G A T A C G T C A G T A C T G A G T C A T C G G C T A C T G A A G T C A C G T
A C G T A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C

CEBPG/MA0838.1/Jaspar

Match Rank:4
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:GTTTGCGAAC-
-ATTGCGCAAT
 A C T G C G A T A C G T C A G T A C T G A G T C A T C G G C T A C T G A A G T C A C G T
A C G T T C G A G C A T G A C T C T A G G A T C C T A G G A T C G T C A G T C A A G C T

FOXD2/MA0847.1/Jaspar

Match Rank:5
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GTTTGCGAAC
TGTTTAC----
 A C G T A C T G C G A T A C G T C A G T A C T G A G T C A T C G G C T A C T G A A G T C
G A C T T C A G C G A T C A G T C A G T C T G A A G T C A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:6
Score:0.56
Offset:2
Orientation:forward strand
Alignment:GTTTGCGAAC
--TTGCCAAG
 A C T G C G A T A C G T C A G T A C T G A G T C A T C G G C T A C T G A A G T C
A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

HOXC12/MA0906.1/Jaspar

Match Rank:7
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GTTTGCGAAC
NTTTTACGACC
 A C G T A C T G C G A T A C G T C A G T A C T G A G T C A T C G G C T A C T G A A G T C
C G A T C A G T C G A T G C A T C G A T T C G A A G T C C A T G C T G A A G T C G A T C

CEBPD/MA0836.1/Jaspar

Match Rank:8
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:GTTTGCGAAC-
-ATTGCGCAAT
 A C T G C G A T A C G T C A G T A C T G A G T C A T C G G C T A C T G A A G T C A C G T
A C G T T C G A A C G T C A G T C A T G A G T C C T A G G A T C G T C A G T C A A G C T

CEBPB/MA0466.2/Jaspar

Match Rank:9
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GTTTGCGAAC-
-ATTGCGCAAT
 A C T G C G A T A C G T C A G T A C T G A G T C A T C G G C T A C T G A A G T C A C G T
A C G T T C G A C A G T A C G T C A T G A G T C C T A G G A T C G T C A C T G A A G C T

MTF1/MA0863.1/Jaspar

Match Rank:10
Score:0.55
Offset:-5
Orientation:reverse strand
Alignment:-----GTTTGCGAAC
GTGCCGTGTGCAAA-
 A C G T A C G T A C G T A C G T A C G T A C T G C G A T A C G T C A G T A C T G A G T C A T C G G C T A C T G A A G T C
C T A G A C G T C T A G G T A C G A T C A C T G A C G T A C T G G A C T A C T G A G T C C G T A T G C A G T C A A C G T