Information for 3-CTGGTTCCATGGT (Motif 6)

T G A C C G A T A C T G C A T G C A G T C A G T A G T C A G T C C G T A A C G T C T A G C T A G A G C T
Reverse Opposite:
C T G A A G T C A G T C C G T A A C G T T A C G A C T G G C T A G C T A G T A C A G T C C G T A A C T G
p-value:1e-6
log p-value:-1.468e+01
Information Content per bp:1.709
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif8.57%
Number of Background Sequences with motif18.2
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets30.3 +/- 9.8bp
Average Position of motif in Background54.8 +/- 31.5bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.70
Offset:1
Orientation:forward strand
Alignment:CTGGTTCCATGGT--
-NGTTGCCATGGCAA
 T G A C C G A T A C T G C A T G C A G T C A G T A G T C A G T C C G T A A C G T C T A G C T A G A G C T A C G T A C G T
A C G T A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.69
Offset:1
Orientation:forward strand
Alignment:CTGGTTCCATGGT--
-GGTTGCCATGGCAA
 T G A C C G A T A C T G C A T G C A G T C A G T A G T C A G T C C G T A A C G T C T A G C T A G A G C T A C G T A C G T
A C G T C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

Rfx1/MA0509.1/Jaspar

Match Rank:3
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:CTGGTTCCATGGT---
--GTTGCCATGGNAAC
 T G A C C G A T A C T G C A T G C A G T C A G T A G T C A G T C C G T A A C G T C T A G C T A G A G C T A C G T A C G T A C G T
A C G T A C G T A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C

RFX3/MA0798.1/Jaspar

Match Rank:4
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CTGGTTCCATGGT----
-CGTTGCCATGGCAACG
 T G A C C G A T A C T G C A T G C A G T C A G T A G T C A G T C C G T A A C G T C T A G C T A G A G C T A C G T A C G T A C G T A C G T
A C G T A T G C C T A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A T C G A G A T C T A C G

RFX4/MA0799.1/Jaspar

Match Rank:5
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CTGGTTCCATGGT----
-CGTTGCCATGGCAACG
 T G A C C G A T A C T G C A T G C A G T C A G T A G T C A G T C C G T A A C G T C T A G C T A G A G C T A C G T A C G T A C G T A C G T
A C G T A T G C C T A G G C A T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A T C G A G A T C T A C G

RFX2/MA0600.2/Jaspar

Match Rank:6
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CTGGTTCCATGGT----
-CGTTGCCATGGCAACG
 T G A C C G A T A C T G C A T G C A G T C A G T A G T C A G T C C G T A A C G T C T A G C T A G A G C T A C G T A C G T A C G T A C G T
A C G T A T G C T C A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A G A T C T A C G

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CTGGTTCCATGGT
CTGTTGCTAGGS-
 T G A C C G A T A C T G C A T G C A G T C A G T A G T C A G T C C G T A A C G T C T A G C T A G A G C T
A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G A C G T

RFX5/MA0510.2/Jaspar

Match Rank:8
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CTGGTTCCATGGT----
-CGTTGCCATGGCAACG
 T G A C C G A T A C T G C A T G C A G T C A G T A G T C A G T C C G T A A C G T C T A G C T A G A G C T A C G T A C G T A C G T A C G T
A C G T A T G C C T A G A G C T G A C T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C T G A T G C A G A T C T A C G

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:9
Score:0.64
Offset:2
Orientation:forward strand
Alignment:CTGGTTCCATGGT----
--GTTGCCATGGCAACM
 T G A C C G A T A C T G C A T G C A G T C A G T A G T C A G T C C G T A A C G T C T A G C T A G A G C T A C G T A C G T A C G T A C G T
A C G T A C G T C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C T G A C

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:10
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CTGGTTCCATGGT---
CGGTTGCCATGGCAAC
 T G A C C G A T A C T G C A T G C A G T C A G T A G T C A G T C C G T A A C G T C T A G C T A G A G C T A C G T A C G T A C G T
A G T C A T C G C T A G A G C T G A C T C T A G A G T C A G T C G C T A C A G T T C A G T C A G G A T C C T G A T C G A G A T C