Information for 1-AGCAGTCGGG (Motif 4)

G T C A C A T G A T G C G T C A T A C G G A C T G A T C A T C G C T A G A C T G
Reverse Opposite:
T G A C G A T C T A G C C T A G C T G A A T G C C A G T T A C G G A T C C A G T
p-value:1e-11
log p-value:-2.663e+01
Information Content per bp:1.655
Number of Target Sequences with motif84.0
Percentage of Target Sequences with motif8.74%
Number of Background Sequences with motif1767.6
Percentage of Background Sequences with motif3.78%
Average Position of motif in Targets44.5 +/- 27.4bp
Average Position of motif in Background51.0 +/- 33.3bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0203.1_Zfp691_2/Jaspar

Match Rank:1
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----AGCAGTCGGG--
NTNNNAGGAGTCTCNTN
 A C G T A C G T A C G T A C G T A C G T G T C A C A T G A T G C G T C A T A C G G A C T G A T C A T C G C T A G A C T G A C G T A C G T
A T C G C A G T A C G T G C T A C T A G C T G A A C T G A C T G C G T A A T C G A G C T G T A C G C A T T G A C T A C G G A C T G T C A

PB0150.1_Mybl1_2/Jaspar

Match Rank:2
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---AGCAGTCGGG--
CACGGCAGTTGGTNN
 A C G T A C G T A C G T G T C A C A T G A T G C G T C A T A C G G A C T G A T C A T C G C T A G A C T G A C G T A C G T
T G A C C G T A A G T C C A T G C T A G A G T C T C G A A C T G A C G T C A G T C T A G C T A G A C G T T A G C T A C G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:AGCAGTCGGG-
-CCAGACRSVB
 G T C A C A T G A T G C G T C A T A C G G A C T G A T C A T C G C T A G A C T G A C G T
A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

NHLH1/MA0048.2/Jaspar

Match Rank:4
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:AGCAGTCGGG
CGCAGCTGCG
 G T C A C A T G A T G C G T C A T A C G G A C T G A T C A T C G C T A G A C T G
T G A C C T A G A T G C T C G A A T C G T A G C A C G T A C T G A G T C A C T G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.56
Offset:2
Orientation:forward strand
Alignment:AGCAGTCGGG
--CTGTCTGG
 G T C A C A T G A T G C G T C A T A C G G A C T G A T C A T C G C T A G A C T G
A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G

AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer

Match Rank:6
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-AGCAGTCGGG
TGGCAGTTGG-
 A C G T G T C A C A T G A T G C G T C A T A C G G A C T G A T C A T C G C T A G A C T G
G A C T C T A G C T A G A G T C T G C A A C T G A C G T A C G T C T A G T C A G A C G T

PB0149.1_Myb_2/Jaspar

Match Rank:7
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----AGCAGTCGGG--
NNNTGGCAGTTGGTNN
 A C G T A C G T A C G T A C G T G T C A C A T G A T G C G T C A T A C G G A C T G A T C A T C G C T A G A C T G A C G T A C G T
C T A G T A G C T C G A G A C T C T A G C T A G A G T C C T G A A C T G A C G T G A C T C T A G T C A G C A G T G T A C T A C G

SP2/MA0516.1/Jaspar

Match Rank:8
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---AGCAGTCGGG--
GGGNGGGGGCGGGGC
 A C G T A C G T A C G T G T C A C A T G A T G C G T C A T A C G G A C T G A T C A T C G C T A G A C T G A C G T A C G T
T A C G T A C G T A C G T C G A C T A G C T A G C T A G C T A G A C T G G T A C C T A G A T C G C T A G T C A G T A G C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---AGCAGTCGGG
CACAGCAGGGGG-
 A C G T A C G T A C G T G T C A C A T G A T G C G T C A T A C G G A C T G A T C A T C G C T A G A C T G
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T

Tcf12/MA0521.1/Jaspar

Match Rank:10
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----AGCAGTCGGG
NNGCAGCTGTT---
 A C G T A C G T A C G T A C G T G T C A C A T G A T G C G T C A T A C G G A C T G A T C A T C G C T A G A C T G
A T G C G C A T A T C G A G T C C G T A A T C G A G T C A C G T A C T G A G C T A G C T A C G T A C G T A C G T