Information for 1-CGCCATGAGCAAC (Motif 3)

G T A C A C T G A G T C A G T C C G T A A C G T A C T G C G T A A C T G G T A C C G T A C T G A A G T C
Reverse Opposite:
A C T G A G C T A C G T A C T G T A G C G A C T A G T C C G T A A C G T A C T G C T A G G T A C A C T G
p-value:1e-11
log p-value:-2.749e+01
Information Content per bp:1.822
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.83%
Number of Background Sequences with motif6.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets41.6 +/- 18.2bp
Average Position of motif in Background46.2 +/- 28.0bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY2/MA0748.1/Jaspar

Match Rank:1
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CGCCATGAGCAAC
GTCCGCCATTA-----
 A C G T A C G T A C G T G T A C A C T G A G T C A G T C C G T A A C G T A C T G C G T A A C T G G T A C C G T A C T G A A G T C
C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A A C G T A C G T A C G T A C G T A C G T

PB0044.1_Mtf1_1/Jaspar

Match Rank:2
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CGCCATGAGCAAC--
GGGCCGTGTGCAAAAA
 A C G T G T A C A C T G A G T C A G T C C G T A A C G T A C T G C G T A A C T G G T A C C G T A C T G A A G T C A C G T A C G T
C A T G A C T G C T A G G A T C G T A C C A T G C A G T A C T G G A C T C A T G G T A C C G T A T G C A G T C A C T G A G C A T

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:3
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CGCCATGAGCAAC---
TGCCAAAATAAACANN
 G T A C A C T G A G T C A G T C C G T A A C G T A C T G C G T A A C T G G T A C C G T A C T G A A G T C A C G T A C G T A C G T
C G A T A C T G T A G C G T A C C G T A C T G A C T G A C T G A G A C T G T C A G T C A C T G A A G T C C G T A C T G A G C T A

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:4
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---CGCCATGAGCAAC
NGTTGCCATGGCAA--
 A C G T A C G T A C G T G T A C A C T G A G T C A G T C C G T A A C G T A C T G C G T A A C T G G T A C C G T A C T G A A G T C
A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A C G T A C G T

MTF1/MA0863.1/Jaspar

Match Rank:5
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CGCCATGAGCAAC
GTGCCGTGTGCAAA
 A C G T G T A C A C T G A G T C A G T C C G T A A C G T A C T G C G T A A C T G G T A C C G T A C T G A A G T C
C T A G A C G T C T A G G T A C G A T C A C T G A C G T A C T G G A C T A C T G A G T C C G T A T G C A G T C A

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:6
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CGCCATGAGCAAC
TTGCCATGGCAACC
 A C G T G T A C A C T G A G T C A G T C C G T A A C G T A C T G C G T A A C T G G T A C C G T A C T G A A G T C
A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:7
Score:0.54
Offset:1
Orientation:forward strand
Alignment:CGCCATGAGCAAC---
-ACCGTGACTAATTNN
 G T A C A C T G A G T C A G T C C G T A A C G T A C T G C G T A A C T G G T A C C G T A C T G A A G T C A C G T A C G T A C G T
A C G T C G T A T A G C A G T C C T A G C A G T C T A G C T G A G T A C G C A T T C G A C G T A G C A T A G C T C T A G T C G A

CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:8
Score:0.54
Offset:3
Orientation:forward strand
Alignment:CGCCATGAGCAAC
---ATTGCGCAAC
 G T A C A C T G A G T C A G T C C G T A A C G T A C T G C G T A A C T G G T A C C G T A C T G A A G T C
A C G T A C G T A C G T T G C A A G C T A C G T C T A G G A T C C T A G G A T C G T C A C T G A A G T C

MAFG::NFE2L1/MA0089.1/Jaspar

Match Rank:9
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:CGCCATGAGCAAC
-GTCATN------
 G T A C A C T G A G T C A G T C C G T A A C G T A C T G C G T A A C T G G T A C C G T A C T G A A G T C
A C G T T C A G A C G T G A T C C G T A A G C T A T C G A C G T A C G T A C G T A C G T A C G T A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:10
Score:0.53
Offset:1
Orientation:forward strand
Alignment:CGCCATGAGCAAC
-BTCAAGGTCA--
 G T A C A C T G A G T C A G T C C G T A A C G T A C T G C G T A A C T G G T A C C G T A C T G A A G T C
A C G T A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A A C G T A C G T