Information for 4-GCTGCCAGTCCCA (Motif 5)

A T C G A T G C A G C T A C T G A T G C A G T C G T C A A C T G G A C T T A G C G T A C A G T C T G C A
Reverse Opposite:
A C G T A C T G C A T G A T C G C T G A A G T C A C G T A C T G A T C G A G T C C T G A A T C G A T G C
p-value:1e-10
log p-value:-2.503e+01
Information Content per bp:1.795
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.61%
Number of Background Sequences with motif44.0
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets53.7 +/- 24.9bp
Average Position of motif in Background54.8 +/- 25.6bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC/MA0161.1/Jaspar

Match Rank:1
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:GCTGCCAGTCCCA
--TGCCAA-----
 A T C G A T G C A G C T A C T G A T G C A G T C G T C A A C T G G A C T T A G C G T A C A G T C T G C A
A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:2
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GCTGCCAGTCCCA
SCTGTCAVTCAV-
 A T C G A T G C A G C T A C T G A T G C A G T C G T C A A C T G G A C T T A G C G T A C A G T C T G C A
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:3
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GCTGCCAGTCCCA
VBTGWCAGCB---
 A T C G A T G C A G C T A C T G A T G C A G T C G T C A A C T G G A C T T A G C G T A C A G T C T G C A
T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GCTGCCAGTCCCA
CGTGCCAAG----
 A T C G A T G C A G C T A C T G A T G C A G T C G T C A A C T G G A C T T A G C G T A C A G T C T G C A
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GCTGCCAGTCCCA
-TTGCCAAG----
 A T C G A T G C A G C T A C T G A T G C A G T C G T C A A C T G G A C T T A G C G T A C A G T C T G C A
A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:6
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GCTGCCAGTCCCA
-CTGCCCGCA---
 A T C G A T G C A G C T A C T G A T G C A G T C G T C A A C T G G A C T T A G C G T A C A G T C T G C A
A C G T A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A A C G T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:7
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GCTGCCAGTCCCA
-ATGCCAGACN--
 A T C G A T G C A G C T A C T G A T G C A G T C G T C A A C T G G A C T T A G C G T A C A G T C T G C A
A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T

PB0195.1_Zbtb3_2/Jaspar

Match Rank:8
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--GCTGCCAGTCCCA-
NNNNTGCCAGTGATTG
 A C G T A C G T A T C G A T G C A G C T A C T G A T G C A G T C G T C A A C T G G A C T T A G C G T A C A G T C T G C A A C G T
G C T A G C A T C G A T G A T C G A C T T C A G T G A C T A G C C G T A A C T G A G C T C A T G C G T A A G C T C G A T T C A G

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GCTGCCAGTCCCA
NCTGTCAATCAN-
 A T C G A T G C A G C T A C T G A T G C A G T C G T C A A C T G G A C T T A G C G T A C A G T C T G C A
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GCTGCCAGTCCCA
AGGTGHCAGACA--
 A C G T A T C G A T G C A G C T A C T G A T G C A G T C G T C A A C T G G A C T T A G C G T A C A G T C T G C A
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T