Information for 3-CTGGCCTCGA (Motif 5)

A G T C A C G T A C T G T A C G A G T C T A G C A C G T T A G C T A C G C T G A
Reverse Opposite:
G A C T A T G C A T C G T G C A A T C G A C T G A T G C G T A C G T C A A C T G
p-value:1e-13
log p-value:-3.039e+01
Information Content per bp:1.721
Number of Target Sequences with motif45.0
Percentage of Target Sequences with motif7.11%
Number of Background Sequences with motif845.8
Percentage of Background Sequences with motif1.87%
Average Position of motif in Targets44.4 +/- 24.3bp
Average Position of motif in Background51.2 +/- 32.9bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---CTGGCCTCGA
NNACTTGCCTT--
 A C G T A C G T A C G T A G T C A C G T A C T G T A C G A G T C T A G C A C G T T A G C T A C G C T G A
T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T A C G T A C G T

Nr5a2/MA0505.1/Jaspar

Match Rank:2
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CTGGCCTCGA----
GCTGACCTTGAACTN
 A C G T A G T C A C G T A C T G T A C G A G T C T A G C A C G T T A G C T A C G C T G A A C G T A C G T A C G T A C G T
T A C G T G A C G C A T T C A G C T G A A G T C A G T C A G C T C A G T A T C G C T G A T C G A G A T C G A C T A G C T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:3
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CTGGCCTCGA-
-TGACCTTGAN
 A G T C A C G T A C T G T A C G A G T C T A G C A C G T T A G C T A C G C T G A A C G T
A C G T G C A T C T A G C T G A T G A C G A T C A G C T C A G T A T C G C T G A T G C A

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:4
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CTGGCCTCGA-
-TGACCTTGAV
 A G T C A C G T A C T G T A C G A G T C T A G C A C G T T A G C T A C G C T G A A C G T
A C G T G C A T C T A G C T G A G A T C G T A C G A C T G A C T A T C G C T G A T G C A

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:5
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CTGGCCTCGA
-AGGCCTAG-
 A G T C A C G T A C T G T A C G A G T C T A G C A C G T T A G C T A C G C T G A
A C G T T G C A A C T G T A C G A T G C A G T C G A C T T C G A A T C G A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CTGGCCTCGA
CTGACCTTTG
 A G T C A C G T A C T G T A C G A G T C T A G C A C G T T A G C T A C G C T G A
A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:7
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CTGGCCTCGA
-TGACCTYA-
 A G T C A C G T A C T G T A C G A G T C T A G C A C G T T A G C T A C G C T G A
A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:8
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CTGGCCTCGA
BNTGDCCTTG-
 A C G T A G T C A C G T A C T G T A C G A G T C T A G C A C G T T A G C T A C G C T G A
A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:9
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---CTGGCCTCGA
GGTCTGGCAT---
 A C G T A C G T A C G T A G T C A C G T A C T G T A C G A G T C T A G C A C G T T A G C T A C G C T G A
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:10
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CTGGCCTCGA-
-TGACCTTGAT
 A G T C A C G T A C T G T A C G A G T C T A G C A C G T T A G C T A C G C T G A A C G T
A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T