| Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
SVG |
| 1 |
| n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer | 1e-24 | -5.575e+01 | 0.0000 | 114.0 | 12.53% | 337.1 | 4.16% | motif file (matrix) |
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| 2 |
| Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer | 1e-17 | -4.001e+01 | 0.0000 | 88.0 | 9.67% | 273.0 | 3.37% | motif file (matrix) |
svg |
| 3 |
| CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer | 1e-16 | -3.704e+01 | 0.0000 | 84.0 | 9.23% | 266.2 | 3.29% | motif file (matrix) |
svg |
| 4 |
| c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer | 1e-16 | -3.692e+01 | 0.0000 | 103.0 | 11.32% | 370.7 | 4.58% | motif file (matrix) |
svg |
| 5 |
| BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer | 1e-15 | -3.529e+01 | 0.0000 | 147.0 | 16.15% | 647.1 | 7.99% | motif file (matrix) |
svg |
| 6 |
| c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer | 1e-15 | -3.519e+01 | 0.0000 | 73.0 | 8.02% | 218.4 | 2.70% | motif file (matrix) |
svg |
| 7 |
| NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer | 1e-14 | -3.382e+01 | 0.0000 | 140.0 | 15.38% | 614.7 | 7.59% | motif file (matrix) |
svg |
| 8 |
| NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer | 1e-12 | -2.866e+01 | 0.0000 | 107.0 | 11.76% | 447.9 | 5.53% | motif file (matrix) |
svg |
| 9 |
| USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer | 1e-12 | -2.803e+01 | 0.0000 | 66.0 | 7.25% | 215.3 | 2.66% | motif file (matrix) |
svg |
| 10 |
| bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer | 1e-11 | -2.621e+01 | 0.0000 | 58.0 | 6.37% | 182.3 | 2.25% | motif file (matrix) |
svg |
| 11 |
| ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer | 1e-6 | -1.448e+01 | 0.0000 | 201.0 | 22.09% | 1283.2 | 15.85% | motif file (matrix) |
svg |
| 12 |
| Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer | 1e-4 | -1.130e+01 | 0.0004 | 32.0 | 3.52% | 121.2 | 1.50% | motif file (matrix) |
svg |
| 13 |
| E-box(bHLH)/Promoter/Homer | 1e-4 | -1.068e+01 | 0.0006 | 18.0 | 1.98% | 50.3 | 0.62% | motif file (matrix) |
svg |
| 14 |
| ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer | 1e-3 | -9.050e+00 | 0.0031 | 119.0 | 13.08% | 753.1 | 9.30% | motif file (matrix) |
svg |
| 15 |
| HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer | 1e-2 | -6.841e+00 | 0.0259 | 112.0 | 12.31% | 745.0 | 9.20% | motif file (matrix) |
svg |
| 16 |
| Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer | 1e-2 | -6.046e+00 | 0.0538 | 92.0 | 10.11% | 606.1 | 7.49% | motif file (matrix) |
svg |
| 17 |
| Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer | 1e-2 | -5.629e+00 | 0.0769 | 61.0 | 6.70% | 378.9 | 4.68% | motif file (matrix) |
svg |
| 18 |
| Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer | 1e-2 | -4.831e+00 | 0.1613 | 22.0 | 2.42% | 110.8 | 1.37% | motif file (matrix) |
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