Information for 3-TCGCTGCTSCGGGCCC (Motif 9)

C A G T A T G C A T C G A G T C G C A T A T C G A G T C A G C T A T G C A T G C A C T G A C T G C T A G A T G C A G T C A G T C
Reverse Opposite:
C T A G A C T G A T C G A G T C T G A C G T A C A T C G A T C G T C G A C T A G A T G C C G T A A C T G T A G C A T C G G C T A
p-value:1e-14
log p-value:-3.261e+01
Information Content per bp:1.784
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif0.99%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets55.7 +/- 27.5bp
Average Position of motif in Background53.8 +/- 10.9bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL013.1_MED-1/Jaspar

Match Rank:1
Score:0.56
Offset:5
Orientation:forward strand
Alignment:TCGCTGCTSCGGGCCC
-----GCTCCG-----
 C A G T A T G C A T C G A G T C G C A T A T C G A G T C A G C T A T G C A T G C A C T G A C T G C T A G A T G C A G T C A G T C
A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T A G T C A G T C A T C G A C G T A C G T A C G T A C G T A C G T

NHLH1/MA0048.2/Jaspar

Match Rank:2
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:TCGCTGCTSCGGGCCC
-CGCAGCTGCG-----
 C A G T A T G C A T C G A G T C G C A T A T C G A G T C A G C T A T G C A T G C A C T G A C T G C T A G A T G C A G T C A G T C
A C G T T G A C C T A G A T G C T C G A A T C G T A G C A C G T A C T G A G T C A C T G A C G T A C G T A C G T A C G T A C G T

ZIC3/MA0697.1/Jaspar

Match Rank:3
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:TCGCTGCTSCGGGCCC
NCGCAGCGGGGGGTC-
 C A G T A T G C A T C G A G T C G C A T A T C G A G T C A G C T A T G C A T G C A C T G A C T G C T A G A T G C A G T C A G T C
C A T G G T A C C T A G G A T C T G C A T C A G A G T C C T A G A C T G A C T G C A T G C A T G C A T G A G C T T G A C A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-TCGCTGCTSCGGGCCC
CCCCCTGCTGTG-----
 A C G T C A G T A T G C A T C G A G T C G C A T A T C G A G T C A G C T A T G C A T G C A C T G A C T G C T A G A T G C A G T C A G T C
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T A C G T A C G T

ZIC1/MA0696.1/Jaspar

Match Rank:5
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:TCGCTGCTSCGGGCCC
-CACAGCGGGGGGTC-
 C A G T A T G C A T C G A G T C G C A T A T C G A G T C A G C T A T G C A T G C A C T G A C T G C T A G A T G C A G T C A G T C
A C G T T G A C C T G A A G T C T G C A T C A G A G T C C T A G C A T G T C A G C A T G C A T G C A T G A G C T T G A C A C G T

ZIC4/MA0751.1/Jaspar

Match Rank:6
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:TCGCTGCTSCGGGCCC
NCNCAGCGGGGGGTC-
 C A G T A T G C A T C G A G T C G C A T A T C G A G T C A G C T A T G C A T G C A C T G A C T G C T A G A T G C A G T C A G T C
C A T G T G A C C T G A G A T C G T C A T C A G G A T C C T A G C A T G C A T G C A T G C A T G C A T G A G C T T G A C A C G T

TFAP2A/MA0003.3/Jaspar

Match Rank:7
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:TCGCTGCTSCGGGCCC
----NGCCTGAGGCN-
 C A G T A T G C A T C G A G T C G C A T A T C G A G T C A G C T A T G C A T G C A C T G A C T G C T A G A T G C A G T C A G T C
A C G T A C G T A C G T A C G T G C A T A T C G A T G C A G T C A C G T A T C G T C G A T C A G A T C G A T G C C A T G A C G T

TFAP2C(var.2)/MA0814.1/Jaspar

Match Rank:8
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:TCGCTGCTSCGGGCCC
----NGCCTNAGGCN-
 C A G T A T G C A T C G A G T C G C A T A T C G A G T C A G C T A T G C A T G C A C T G A C T G C T A G A T G C A G T C A G T C
A C G T A C G T A C G T A C G T G C A T A T C G A T G C A G T C A G C T A T C G T C G A T C A G A T C G A T G C C A G T A C G T

ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.51
Offset:8
Orientation:forward strand
Alignment:TCGCTGCTSCGGGCCC--
--------GTGGGCCCCA
 C A G T A T G C A T C G A G T C G C A T A T C G A G T C A G C T A T G C A T G C A C T G A C T G C T A G A T G C A G T C A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G G A C T A C T G A C T G C T A G A T G C A G T C A G T C A G T C C T G A

PB0205.1_Zic1_2/Jaspar

Match Rank:10
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-TCGCTGCTSCGGGCCC
TNTCCTGCTGTGNNG--
 A C G T C A G T A T G C A T C G A G T C G C A T A T C G A G T C A G C T A T G C A T G C A C T G A C T G C T A G A T G C A G T C A G T C
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G A C G T A C G T