Information for 18-GTCTATTAGT (Motif 31)

A C T G A C G T A G T C A C G T C T G A A C G T A C G T C T G A A C T G A C G T
Reverse Opposite:
C G T A A G T C A G C T C G T A C G T A A G C T C G T A A C T G C G T A G T A C
p-value:1e-8
log p-value:-1.980e+01
Information Content per bp:1.905
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.66%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets59.1 +/- 19.8bp
Average Position of motif in Background66.6 +/- 0.4bp
Strand Bias (log2 ratio + to - strand density)-1.3
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA13/MA0650.1/Jaspar

Match Rank:1
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GTCTATTAGT
TTTTTATTGG-
 A C G T A C T G A C G T A G T C A C G T C T G A A C G T A C G T C T G A A C T G A C G T
C A G T A C G T A C G T C G A T C G A T C G T A C G A T C A G T T C A G A T C G A C G T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:2
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GTCTATTAGT
TTTTATKRGG
 A C T G A C G T A G T C A C G T C T G A A C G T A C G T C T G A A C T G A C G T
C G A T A C G T A C G T A C G T C G T A A G C T C A G T C T A G A T C G A C T G

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:3
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GTCTATTAGT
-BCMATTAG-
 A C T G A C G T A G T C A C G T C T G A A C G T A C G T C T G A A C T G A C G T
A C G T A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G A C G T

PH0057.1_Hoxb13/Jaspar

Match Rank:4
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----GTCTATTAGT--
NNAATTTTATTGGNTN
 A C G T A C G T A C G T A C G T A C T G A C G T A G T C A C G T C T G A A C G T A C G T C T G A A C T G A C G T A C G T A C G T
A T G C C T A G C G T A C G T A A C G T C G A T C G A T G C A T C T G A G A C T C A G T C T A G T A C G C A T G G A C T A C G T

MEF2A/MA0052.3/Jaspar

Match Rank:5
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GTCTATTAGT---
-TCTATTTTTAGA
 A C T G A C G T A G T C A C G T C T G A A C G T A C G T C T G A A C T G A C G T A C G T A C G T A C G T
A C G T C A G T G A T C C A G T C T G A C G A T C G A T C G A T G C A T C G A T C T G A C A T G G T C A

PB0119.1_Foxa2_2/Jaspar

Match Rank:6
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--GTCTATTAGT---
NCNTTTGTTATTTNN
 A C G T A C G T A C T G A C G T A G T C A C G T C T G A A C G T A C G T C T G A A C T G A C G T A C G T A C G T A C G T
A T G C A T G C A T C G A G C T C A G T C A G T C T A G G C A T G A C T T C G A C A G T G A C T G C A T A G C T A G C T

HOXB13/MA0901.1/Jaspar

Match Rank:7
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GTCTATTAGT
NTTTTATTGG-
 A C G T A C T G A C G T A G T C A C G T C T G A A C G T A C G T C T G A A C T G A C G T
C A T G C A G T C A G T C G A T G C A T C T G A G C A T C A G T C T A G A T C G A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:8
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GTCTATTAGT
NTTTTATTGG-
 A C G T A C T G A C G T A G T C A C G T C T G A A C G T A C G T C T G A A C T G A C G T
C A G T C A G T A C G T C G A T C G A T C T G A G C A T C A G T C T A G T A C G A C G T

MEF2D/MA0773.1/Jaspar

Match Rank:9
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GTCTATTAGT---
-TCTATTTATAGN
 A C T G A C G T A G T C A C G T C T G A A C G T A C G T C T G A A C T G A C G T A C G T A C G T A C G T
A C G T C A G T A G T C A G C T C G T A C G A T G C A T C G A T G C T A C A G T C T G A C T A G G A C T

PH0078.1_Hoxd13/Jaspar

Match Rank:10
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----GTCTATTAGT--
NNANTTTTATTGGNNN
 A C G T A C G T A C G T A C G T A C T G A C G T A G T C A C G T C T G A A C G T A C G T C T G A A C T G A C G T A C G T A C G T
C G T A C A T G C T G A C T G A C A G T C G A T C G A T G C A T C T G A G A C T C G A T C T A G T C A G C G A T G C T A C A T G