Information for 15-CCTAAGCAGC (Motif 28)

G T A C A G T C C G A T T G C A C T G A A C T G A G T C C G T A C A T G A G T C
Reverse Opposite:
A C T G G A T C G C A T A C T G G T A C A G C T A C G T C G T A C T A G A C T G
p-value:1e-9
log p-value:-2.123e+01
Information Content per bp:1.838
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif1.87%
Number of Background Sequences with motif21.2
Percentage of Background Sequences with motif0.26%
Average Position of motif in Targets49.4 +/- 29.3bp
Average Position of motif in Background39.1 +/- 28.4bp
Strand Bias (log2 ratio + to - strand density)1.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0055.1_Rfx4_1/Jaspar

Match Rank:1
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CCTAAGCAGC---
TACCATAGCAACGGT
 A C G T A C G T G T A C A G T C C G A T T G C A C T G A A C T G A G T C C G T A C A T G A G T C A C G T A C G T A C G T
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T

PB0054.1_Rfx3_1/Jaspar

Match Rank:2
Score:0.63
Offset:-6
Orientation:forward strand
Alignment:------CCTAAGCAGC-------
TGTGACCCTTAGCAACCGATTAA
 A C G T A C G T A C G T A C G T A C G T A C G T G T A C A G T C C G A T T G C A C T G A A C T G A G T C C G T A C A T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C A T G A G C T A T C G G T C A G A T C T G A C A T G C G A C T A G C T T C G A C T A G G A T C C T G A C G T A A G T C T A G C T C A G C G T A G C A T G C A T G C T A G C T A

PH0098.1_Lhx8/Jaspar

Match Rank:3
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---CCTAAGCAGC----
ACCCCTAATTAGCGGTG
 A C G T A C G T A C G T G T A C A G T C C G A T T G C A C T G A A C T G A G T C C G T A C A T G A G T C A C G T A C G T A C G T A C G T
G C T A T G A C T G A C T G A C T G A C G A C T T C G A C T G A A G C T A G C T C T G A A C T G A G T C C A T G C A T G A C G T C T A G

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:4
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CCTAAGCAGC---
CCGCATAGCAACGGA
 A C G T A C G T G T A C A G T C C G A T T G C A C T G A A C T G A G T C C G T A C A T G A G T C A C G T A C G T A C G T
A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A

Ascl2/MA0816.1/Jaspar

Match Rank:5
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:CCTAAGCAGC----
----AGCAGCTGCT
 G T A C A G T C C G A T T G C A C T G A A C T G A G T C C G T A C A T G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T G A T C A G T G A C C G T A A C T G T A G C C G A T C A T G A G T C A G C T

PH0097.1_Lhx6_2/Jaspar

Match Rank:6
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CCTAAGCAGC----
TCCACTAATTAGCGGTT
 A C G T A C G T A C G T G T A C A G T C C G A T T G C A C T G A A C T G A G T C C G T A C A T G A G T C A C G T A C G T A C G T A C G T
G C A T T G A C G A T C T C G A G A T C G A C T T C G A C T G A A G C T A G C T C T G A C T A G A G T C C A T G C T A G C G A T A C G T

Crx/MA0467.1/Jaspar

Match Rank:7
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CCTAAGCAGC--
-CTAATCCTCTT
 G T A C A G T C C G A T T G C A C T G A A C T G A G T C C G T A C A T G A G T C A C G T A C G T
A C G T G A T C C G A T C T G A C G T A A C G T A G T C G A T C A G C T G A T C G A C T A G C T

NRL/MA0842.1/Jaspar

Match Rank:8
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CCTAAGCAGC--
-GTCAGCANNTN
 G T A C A G T C C G A T T G C A C T G A A C T G A G T C C G T A C A T G A G T C A C G T A C G T
A C G T T C A G C G A T G T A C C G T A C A T G A G T C C T G A C G T A C G T A G C A T G C A T

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:9
Score:0.58
Offset:4
Orientation:forward strand
Alignment:CCTAAGCAGC--
----ANCAGCTG
 G T A C A G T C C G A T T G C A C T G A A C T G A G T C C G T A C A T G A G T C A C G T A C G T
A C G T A C G T A C G T A C G T C T G A T C A G G T A C G C T A A C T G T G A C G C A T C A T G

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CCTAAGCAGC--
SCCTAGCAACAG
 G T A C A G T C C G A T T G C A C T G A A C T G A G T C C G T A C A T G A G T C A C G T A C G T
A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G