Information for 5-CCAAGAGACATTA (Motif 5)

A G T C A G T C C G T A C T G A A C T G C G T A A T C G C T G A A G T C G T C A A C G T C G A T C G T A
Reverse Opposite:
A C G T C G T A C G T A A C G T A C T G G A C T A T G C A C G T G T A C A G C T A C G T A C T G A C T G
p-value:1e-13
log p-value:-3.149e+01
Information Content per bp:1.862
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.82%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets59.2 +/- 27.7bp
Average Position of motif in Background31.9 +/- 16.6bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PROX1/MA0794.1/Jaspar

Match Rank:1
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CCAAGAGACATTA
-CAAGACGCCTTA
 A G T C A G T C C G T A C T G A A C T G C G T A A T C G C T G A A G T C G T C A A C G T C G A T C G T A
A C G T A G T C C T G A G C T A C T A G T C G A G A T C C A T G G A T C A G T C C A G T A G C T T C G A

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:2
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----CCAAGAGACATTA
ATTTCCCAGVAKSCY---
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A C T G A A C T G C G T A A T C G C T G A A G T C G T C A A C G T C G A T C G T A
T G C A G C A T A G C T G C A T A G T C A G T C A G T C C T G A A C T G T C G A T C G A C A G T A T C G A G T C G A T C A C G T A C G T A C G T

JDP2/MA0655.1/Jaspar

Match Rank:3
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:CCAAGAGACATTA
--ATGAGTCAT--
 A G T C A G T C C G T A C T G A A C T G C G T A A T C G C T G A A G T C G T C A A C G T C G A T C G T A
A C G T A C G T C T G A C G A T C A T G G C T A A T C G G C A T T G A C C T G A A G C T A C G T A C G T

NFE2/MA0841.1/Jaspar

Match Rank:4
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:CCAAGAGACATTA
-GATGAGTCATN-
 A G T C A G T C C G T A C T G A A C T G C G T A A T C G C T G A A G T C G T C A A C G T C G A T C G T A
A C G T T A C G T C G A A C G T C T A G T C G A A T C G C A G T G T A C C T G A A G C T A C T G A C G T

PB0135.1_Hoxa3_2/Jaspar

Match Rank:5
Score:0.54
Offset:2
Orientation:forward strand
Alignment:CCAAGAGACATTA---
--AAAAACCATTAAGG
 A G T C A G T C C G T A C T G A A C T G C G T A A T C G C T G A A G T C G T C A A C G T C G A T C G T A A C G T A C G T A C G T
A C G T A C G T T C G A G T C A C T G A G C T A C G T A T G A C A G T C T G C A C G A T G C A T C G T A C T G A A T C G T C A G

NFIC/MA0161.1/Jaspar

Match Rank:6
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--CCAAGAGACATTA
TGCCAA---------
 A C G T A C G T A G T C A G T C C G T A C T G A A C T G C G T A A T C G C T G A A G T C G T C A A C G T C G A T C G T A
G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

USF1/MA0093.2/Jaspar

Match Rank:7
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-CCAAGAGACATTA
GCCACGTGACC---
 A C G T A G T C A G T C C G T A C T G A A C T G C G T A A T C G C T G A A G T C G T C A A C G T C G A T C G T A
T C A G A G T C G T A C C G T A A G T C T C A G A C G T A C T G C T G A A G T C G A T C A C G T A C G T A C G T

ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:CCAAGAGACATTA--------
-AADGAGVCANYASTACAGNC
 A G T C A G T C C G T A C T G A A C T G C G T A A T C G C T G A A G T C G T C A A C G T C G A T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G C T A T C G A C G A T C T A G C T G A C A T G T A G C G T A C C T G A C A T G G A T C G C T A T A G C G A C T C T G A A T G C T G C A C T A G C T G A G A T C

PH0125.1_Obox5_2/Jaspar

Match Rank:9
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:CCAAGAGACATTA------
--NANAGGGATTAATTATN
 A G T C A G T C C G T A C T G A A C T G C G T A A T C G C T G A A G T C G T C A A C G T C G A T C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T C G A C T G A T C A G T C G A T C A G T C A G A C T G G C T A A C G T C G A T C G T A C G T A G C A T G A C T T C G A G C A T T G A C

PB0147.1_Max_2/Jaspar

Match Rank:10
Score:0.51
Offset:-3
Orientation:forward strand
Alignment:---CCAAGAGACATTA
GTGCCACGCGACTG--
 A C G T A C G T A C G T A G T C A G T C C G T A C T G A A C T G C G T A A T C G C T G A A G T C G T C A A C G T C G A T C G T A
A C T G A G C T A C T G G A T C A G T C C G T A A G T C T C A G G A T C A C T G T C G A T G A C C A G T C A T G A C G T A C G T