Information for 7-CTTTTATTAAGAG (Motif 9)

A T G C A C G T A C G T A C G T A C G T C G T A C G A T A G C T C G T A C G T A A C T G C T G A A C T G
Reverse Opposite:
A G T C A G C T A G T C A C G T A C G T C T G A C G T A A C G T C G T A C G T A C G T A G T C A A T C G
p-value:1e-11
log p-value:-2.554e+01
Information Content per bp:1.868
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.69%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets47.2 +/- 20.7bp
Average Position of motif in Background42.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0078.1_Hoxd13/Jaspar

Match Rank:1
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---CTTTTATTAAGAG
NNANTTTTATTGGNNN
 A C G T A C G T A C G T A T G C A C G T A C G T A C G T A C G T C G T A C G A T A G C T C G T A C G T A A C T G C T G A A C T G
C G T A C A T G C T G A C T G A C A G T C G A T C G A T G C A T C T G A G A C T C G A T C T A G T C A G C G A T G C T A C A T G

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:2
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CTTTTATTAAGAG
-TTTTATTRGN--
 A T G C A C G T A C G T A C G T A C G T C G T A C G A T A G C T C G T A C G T A A C T G C T G A A C T G
A C G T C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A A C G T A C G T

PB0129.1_Glis2_2/Jaspar

Match Rank:3
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CTTTTATTAAGAG-
TCTTTANTAATANN
 A T G C A C G T A C G T A C G T A C G T C G T A C G A T A G C T C G T A C G T A A C T G C T G A A C T G A C G T
A G C T A G T C C A G T G C A T C G A T C G T A C G A T G A C T G T C A C G T A G A C T T G C A G C A T C G A T

CDX1/MA0878.1/Jaspar

Match Rank:4
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CTTTTATTAAGAG
-TTTTATTGC---
 A T G C A C G T A C G T A C G T A C G T C G T A C G A T A G C T C G T A C G T A A C T G C T G A A C T G
A C G T C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C A C G T A C G T A C G T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:5
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CTTTTATTAAGAG
-TTTTATKRGG--
 A T G C A C G T A C G T A C G T A C G T C G T A C G A T A G C T C G T A C G T A A C T G C T G A A C T G
A C G T C G A T A C G T A C G T A C G T C G T A A G C T C A G T C T A G A T C G A C T G A C G T A C G T

PB0001.1_Arid3a_1/Jaspar

Match Rank:6
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---CTTTTATTAAGAG-
NNNTTTTAATTAANNNN
 A C G T A C G T A C G T A T G C A C G T A C G T A C G T A C G T C G T A C G A T A G C T C G T A C G T A A C T G C T G A A C T G A C G T
C T A G C G T A C G T A C A G T G C A T G A C T A G C T C T G A C G T A C G A T G A C T T C G A C T G A C G T A T G A C T A G C A T G C

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:7
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CTTTTATTAAGAG
NTTTTATGAC---
 A T G C A C G T A C G T A C G T A C G T C G T A C G A T A G C T C G T A C G T A A C T G C T G A A C T G
C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C A C G T A C G T A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:8
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CTTTTATTAAGAG
NTTTTATTGG---
 A T G C A C G T A C G T A C G T A C G T C G T A C G A T A G C T C G T A C G T A A C T G C T G A A C T G
C A G T C A G T A C G T C G A T C G A T C T G A G C A T C A G T C T A G T A C G A C G T A C G T A C G T

HOXA10/MA0899.1/Jaspar

Match Rank:9
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CTTTTATTAAGAG
NTTTTATTACN--
 A T G C A C G T A C G T A C G T A C G T C G T A C G A T A G C T C G T A C G T A A C T G C T G A A C T G
C A G T C A G T C A G T G C A T G C A T C G T A A G C T A C G T C T G A A G T C G A T C A C G T A C G T

PH0153.1_Prop1/Jaspar

Match Rank:10
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CTTTTATTAAGAG--
CGAATTAATTAAGAAAC
 A C G T A C G T A T G C A C G T A C G T A C G T A C G T C G T A C G A T A G C T C G T A C G T A A C T G C T G A A C T G A C G T A C G T
T G A C T C A G T G C A T C G A G A C T G A C T C G T A C G T A G A C T A C G T C T G A C T G A A C T G C G T A C G T A C T G A G A T C