Information for 3-GGCACAGACGKGT (Motif 3)

A C T G T A C G G T A C G C T A A T G C C G T A A C T G C G T A A T G C T C A G A C T G A T C G A G C T
Reverse Opposite:
C T G A A T G C G T A C A G T C T A C G G A C T A G T C C G A T A T C G C G A T A C T G A T G C T G A C
p-value:1e-19
log p-value:-4.509e+01
Information Content per bp:1.720
Number of Target Sequences with motif28.0
Percentage of Target Sequences with motif3.61%
Number of Background Sequences with motif148.5
Percentage of Background Sequences with motif0.32%
Average Position of motif in Targets43.5 +/- 19.4bp
Average Position of motif in Background51.3 +/- 36.8bp
Strand Bias (log2 ratio + to - strand density)-1.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:GGCACAGACGKGT
---CCAGACRSVB
 A C T G T A C G G T A C G C T A A T G C C G T A A C T G C G T A A T G C T C A G A C T G A T C G A G C T
A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:GGCACAGACGKGT
---CCAGACAG--
 A C T G T A C G G T A C G C T A A T G C C G T A A C T G C G T A A T G C T C A G A C T G A T C G A G C T
A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:3
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GGCACAGACGKGT--
CAAATCCAGACATCACA
 A C G T A C G T A C T G T A C G G T A C G C T A A T G C C G T A A C T G C G T A A T G C T C A G A C T G A T C G A G C T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

PB0130.1_Gm397_2/Jaspar

Match Rank:4
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---GGCACAGACGKGT
AGCGGCACACACGCAA
 A C G T A C G T A C G T A C T G T A C G G T A C G C T A A T G C C G T A A C T G C G T A A T G C T C A G A C T G A T C G A G C T
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A

p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GGCACAGACGKGT
ATGCCCGGGCATGT
 A C G T A C T G T A C G G T A C G C T A A T G C C G T A A C T G C G T A A T G C T C A G A C T G A T C G A G C T
G T C A C G A T A C T G A G T C A G T C G A T C C T A G C T A G T C A G A T G C G C T A C G A T A T C G G A C T

PH0140.1_Pknox1/Jaspar

Match Rank:6
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:GGCACAGACGKGT----
-GGATTGACAGGTCNTT
 A C T G T A C G G T A C G C T A A T G C C G T A A C T G C G T A A T G C T C A G A C T G A T C G A G C T A C G T A C G T A C G T A C G T
A C G T A C T G A C T G C G T A C G A T A C G T C T A G C G T A A G T C C T G A A C T G A T C G G A C T T A G C A C G T G A C T G C A T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:7
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---GGCACAGACGKGT
CCAGGAACAG------
 A C G T A C G T A C G T A C T G T A C G G T A C G C T A A T G C C G T A A C T G C G T A A T G C T C A G A C T G A T C G A G C T
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:8
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:GGCACAGACGKGT
---BCAGACWA--
 A C T G T A C G G T A C G C T A A T G C C G T A A C T G C G T A A T G C T C A G A C T G A T C G A G C T
A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:9
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:GGCACAGACGKGT
--CACAGN-----
 A C T G T A C G G T A C G C T A A T G C C G T A A C T G C G T A A T G C T C A G A C T G A T C G A G C T
A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T

p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer

Match Rank:10
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----GGCACAGACGKGT---
AACATGCCCAGACATGCCCN
 A C G T A C G T A C G T A C G T A C T G T A C G G T A C G C T A A T G C C G T A A C T G C G T A A T G C T C A G A C T G A T C G A G C T A C G T A C G T A C G T
C T A G C T G A A G T C G C T A C G A T A C T G G A C T G A T C G A T C C T G A C T A G C T G A T G A C G C T A C G A T T C A G G A C T G A T C G A T C C A G T